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SMTL ID : 1nmx.1
Crystal structure of human thymidylate kinase with FLTMP and ADP
Coordinates
PDB Format
Method
X-RAY DIFFRACTION
1.70 Å
Oligo State
homo-dimer
Ligands
4 x
MG:
MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.1:
3
residues within 4Å:
Chain A:
S.23
Ligands:
FDM.3,
ADP.4
5 PLIP interactions:
1 interactions with chain A,
4 Ligand-Water interactions
Metal complexes:
A:S.23,
H2O.1,
H2O.1,
H2O.1,
H2O.1
MG.2:
1
residues within 4Å:
Ligands:
MG.6
No protein-ligand interaction detected (PLIP)
MG.5:
3
residues within 4Å:
Chain B:
S.23
Ligands:
FDM.7,
ADP.8
5 PLIP interactions:
1 interactions with chain B,
4 Ligand-Water interactions
Metal complexes:
B:S.23,
H2O.13,
H2O.13,
H2O.13,
H2O.13
MG.6:
1
residues within 4Å:
Ligands:
MG.2
No protein-ligand interaction detected (PLIP)
2 x
FDM:
3'-FLUORO-3'-DEOXYTHYMIDINE MONOPHOSPHATE(Non-covalent)
Ostermann, N. et al., Structures of human thymidylate kinase in complex with prodrugs: implications for the structure-based design of novel compounds. Biochemistry (2003)