SMTL ID : 1nne.1

Crystal Structure of the MutS-ADPBeF3-DNA complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.11 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain C: G.583, P.584, N.585, H.696, S.736, Y.737, G.738 Chain D: T.668, S.669 9 PLIP interactions: 6 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:G.583, C:N.585, C:Y.737, C:G.738, D:T.668, D:T.668, D:S.669 Salt bridges: C:K.589, C:H.696 SO4.4: 9 residues within 4Å: Chain C: G.667, T.668 Chain D: G.583, P.584, N.585, H.696, S.736, Y.737, G.738 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:N.585, D:Y.737, D:G.738, C:T.668 Salt bridges: D:H.696

2 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 5 residues within 4Å: Chain C: N.585, S.590, D.662, E.663 Ligands: ADP.3 No protein-ligand interaction detected (PLIP) BEF.5: 5 residues within 4Å: Chain D: N.585, S.590, D.662, E.663 Ligands: ADP.6 No protein-ligand interaction detected (PLIP)

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 15 residues within 4Å: Chain C: V.561, E.566, F.567, V.568, N.570, N.585, M.586, A.587, G.588, K.589, S.590, T.591, H.726 Chain D: G.635 Ligands: BEF.2 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:V.568, C:V.568, C:N.570, C:N.585, C:M.586, C:A.587, C:G.588, C:K.589, C:S.590, C:T.591, C:T.591 Salt bridges: C:K.589 pi-Stacking: C:F.567, C:H.726, C:H.726 ADP.6: 14 residues within 4Å: Chain C: K.636 Chain D: E.566, F.567, V.568, P.584, N.585, M.586, A.587, G.588, K.589, S.590, T.591, H.726 Ligands: BEF.5 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:V.568, D:V.568, D:N.585, D:M.586, D:A.587, D:G.588, D:K.589, D:S.590, D:T.591, D:T.591 Salt bridges: D:K.589 pi-Stacking: D:F.567, D:H.726, D:H.726

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 2 residues within 4Å: Chain D: S.637, T.638 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:T.638

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alani, E. et al., Crystal structure and biochemical analysis of the MutS-ADP-Beryllium Fluoride complex suggests a conserved mechanism for ATP interactions in mismatch repair. J.Biol.Chem. (2003)

Release Date

2003-05-20

Peptides

DNA Mismatch Repair protein MutS: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

DNA Mismatch Repair protein MutS

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