- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
PLP.2: 14 residues within 4Å:- Chain A: Y.90, W.491, V.567, K.568, K.574, Y.648, R.649, V.650, A.653, G.675, T.676, G.677, K.680
- Ligands: PO4.1
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:Y.90, A:Y.648, A:T.676, A:K.680
- Hydrogen bonds: A:Y.648, A:T.676, A:G.677
- Water bridges: A:Y.90, A:K.568, A:K.568, A:K.574, A:N.678
- Salt bridges: A:K.568, A:K.574
PLP.5: 15 residues within 4Å:- Chain B: Y.90, R.138, W.491, K.568, K.574, Y.648, R.649, V.650, A.653, Q.665, G.675, T.676, G.677, K.680
- Ligands: PO4.4
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:Y.90, B:Y.648, B:T.676, B:K.680
- Hydrogen bonds: B:Q.665, B:T.676, B:G.677
- Water bridges: B:K.568, B:K.568, B:K.574, B:N.678, B:N.678
- Salt bridges: B:K.568, B:K.574
PLP.8: 17 residues within 4Å:- Chain C: Y.90, G.134, G.135, R.138, W.491, V.567, K.568, K.574, Y.648, R.649, V.650, Q.665, G.675, T.676, G.677, K.680
- Ligands: PO4.7
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:Y.90, C:Y.648, C:T.676, C:K.680
- Hydrogen bonds: C:Y.648, C:Q.665, C:T.676, C:G.677
- Water bridges: C:K.568, C:K.568, C:K.574, C:N.678
- Salt bridges: C:K.568, C:K.574
PLP.11: 17 residues within 4Å:- Chain D: Y.90, G.134, G.135, R.138, W.491, V.567, K.568, K.574, Y.648, R.649, V.650, A.653, G.675, T.676, G.677, K.680
- Ligands: PO4.10
15 PLIP interactions:15 interactions with chain D- Hydrophobic interactions: D:Y.90, D:R.138, D:Y.648, D:T.676, D:K.680
- Hydrogen bonds: D:Q.665, D:T.676, D:G.677
- Water bridges: D:Y.90, D:K.568, D:K.568, D:K.574, D:N.678
- Salt bridges: D:K.568, D:K.574
- 4 x NTZ: NOJIRIMYCINE TETRAZOLE(Non-covalent)
NTZ.3: 13 residues within 4Å:- Chain A: G.135, L.136, L.139, H.377, T.378, V.455, N.484, Y.573, E.672, A.673, S.674, G.675
- Ligands: PO4.1
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:L.136, A:H.377, A:N.484, A:Y.573, A:E.672, A:A.673, A:S.674, A:G.675, A:G.675
- Water bridges: A:R.569
NTZ.6: 13 residues within 4Å:- Chain B: G.135, L.136, L.139, H.377, T.378, V.455, N.484, Y.573, E.672, A.673, S.674, G.675
- Ligands: PO4.4
13 PLIP interactions:13 interactions with chain B- Hydrogen bonds: B:H.377, B:T.378, B:N.484, B:N.484, B:E.672, B:E.672, B:A.673, B:S.674, B:S.674, B:G.675
- Water bridges: B:L.136, B:L.136, B:T.378
NTZ.9: 10 residues within 4Å:- Chain C: L.136, H.377, V.455, N.484, Y.573, E.672, A.673, S.674, G.675
- Ligands: PO4.7
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:H.377, C:N.484, C:E.672, C:A.673, C:S.674, C:G.675, C:G.675
- Water bridges: C:G.135, C:L.136
NTZ.12: 13 residues within 4Å:- Chain D: G.135, L.136, L.139, H.377, T.378, V.455, N.484, Y.573, E.672, A.673, S.674, G.675
- Ligands: PO4.10
12 PLIP interactions:12 interactions with chain D- Hydrogen bonds: D:N.484, D:N.484, D:E.672, D:E.672, D:A.673, D:S.674, D:G.675, D:G.675
- Water bridges: D:L.136, D:L.136, D:Y.573, D:Y.573
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mitchell, E.P. et al., Ternary complex crystal structures of glycogen phosphorylase with the transition state analogue nojirimycin tetrazole and phosphate in the T and R states. Biochemistry (1996)
- Release Date
- 1996-08-01
- Peptides
- GLYCOGEN PHOSPHORYLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 4 x NTZ: NOJIRIMYCINE TETRAZOLE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mitchell, E.P. et al., Ternary complex crystal structures of glycogen phosphorylase with the transition state analogue nojirimycin tetrazole and phosphate in the T and R states. Biochemistry (1996)
- Release Date
- 1996-08-01
- Peptides
- GLYCOGEN PHOSPHORYLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D