SMTL ID : 1noy.1

DNA POLYMERASE (E.C.2.7.7.7)/DNA COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x DT- DT- DT: DNA (5'-D(*TP*TP*T)-3')(Non-covalent)

DT-DT-DT.1: 16 residues within 4Å: Chain B: D.112, E.114, V.115, K.119, F.120, P.121, N.214, F.218, F.285, S.286, L.287, E.288, Y.317, D.324 Ligands: ZN.2, MN.3 Protein-ligand interaction information (PLIP) not available

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: D.112, E.114, D.324 Ligands: DT-DT-DT.1 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.114, B:D.324

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 4 residues within 4Å: Chain B: D.112, D.219 Ligands: DT-DT-DT.1, DT-DT-DT.1 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.112, H2O.1, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., Crystal structures of an NH2-terminal fragment of T4 DNA polymerase and its complexes with single-stranded DNA and with divalent metal ions. Biochemistry (1996)

Release Date

1996-10-14

Peptides

PROTEIN (DNA POLYMERASE (E.C.2.7.7.7)): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (DNA POLYMERASE (E.C.2.7.7.7))

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