SMTL ID : 1npe.1

Crystal structure of Nidogen/Laminin Complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

6 x CD: CADMIUM ION(Non-covalent)

CD.1: 3 residues within 4Å: Chain A: S.98, D.101, V.122 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.98, A:D.101, A:V.122, H2O.1, H2O.1, H2O.1 CD.2: 1 residues within 4Å: Chain A: H.189 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.189, H2O.3, H2O.3 CD.3: 2 residues within 4Å: Chain A: H.32 Chain B: E.19 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.32, B:E.19, H2O.3 CD.4: 2 residues within 4Å: Chain B: E.96, S.127 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.96, B:E.96, H2O.5 CD.5: 2 residues within 4Å: Chain A: H.248 Chain B: H.24 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.248, B:H.24, H2O.3 CD.6: 1 residues within 4Å: Chain B: H.140 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.140, H2O.5, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takagi, J. et al., Complex between nidogen and laminin fragments reveals a paradigmatic beta-propeller interface. Nature (2003)

Release Date

2003-08-12

Peptides

nidogen: A
Laminin gamma-1 chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

nidogen

Laminin gamma-1 chain