SMTL ID : 1nq5.2 (2 other biounits)

Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys 149 Replaced By Ser Complexed With Nad+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: T.181, D.183, R.196, R.232 Ligands: NAD.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.181, A:D.183 Water bridges: A:N.182, A:D.183 Salt bridges: A:R.196, A:R.232 SO4.3: 5 residues within 4Å: Chain B: T.181, D.183, R.196, R.232 Ligands: NAD.4 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.183, B:D.183, B:R.196 Water bridges: B:D.183, B:D.183 Salt bridges: B:R.232

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.2: 23 residues within 4Å: Chain A: G.8, F.9, G.10, R.11, I.12, N.32, D.33, L.34, E.76, R.77, S.95, T.96, G.97, R.98, F.99, S.119, A.120, S.151, T.181, N.182, N.314, Y.318 Ligands: SO4.1 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.12, A:Y.318 Hydrogen bonds: A:F.9, A:R.11, A:I.12, A:N.32, A:R.77, A:N.182, A:N.314 Water bridges: A:G.10, A:G.13, A:R.77, A:R.77, A:R.77, A:G.97, A:S.119, A:N.182, A:N.182, A:N.182 NAD.4: 23 residues within 4Å: Chain B: G.8, F.9, G.10, R.11, I.12, N.32, D.33, L.34, E.76, R.77, S.95, T.96, G.97, R.98, F.99, S.119, A.120, S.151, T.181, N.182, N.314, Y.318 Ligands: SO4.3 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:I.12, B:Y.318 Hydrogen bonds: B:F.9, B:R.11, B:I.12, B:N.32, B:R.77, B:R.98, B:N.182, B:N.314 Water bridges: B:N.7, B:G.10, B:G.13, B:G.97, B:S.119, B:N.182, B:N.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Didierjean, C. et al., Crystal structure of two ternary complexes of phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase from Bacillus stearothermophilus with NAD and D-Glyceraldehyde-3-Phosphate. J.Biol.Chem. (2003)

Release Date

2003-04-22

Peptides

Glyceraldehyde 3-phosphate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Glyceraldehyde 3-phosphate dehydrogenase

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