- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-60-mer
- Ligands
- 60 x PO4: PHOSPHATE ION(Non-functional Binders)
- 60 x RDL: 6,7-DIOXO-5H-8-RIBITYLAMINOLUMAZINE(Non-covalent)
RDL.2: 14 residues within 4Å:- Chain A: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain B: T.112, F.113
- Ligands: PO4.1
12 PLIP interactions:10 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:S.20, A:N.23, A:S.56, A:W.57, A:E.58, A:V.80, A:I.82, A:H.88, B:F.113, B:F.113
- pi-Stacking: A:F.22, A:F.22
RDL.4: 14 residues within 4Å:- Chain B: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain C: T.112, F.113
- Ligands: PO4.3
11 PLIP interactions:9 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:N.23, B:S.56, B:W.57, B:E.58, B:V.80, B:I.82, B:H.88, C:F.113, C:F.113
- pi-Stacking: B:F.22, B:F.22
RDL.6: 14 residues within 4Å:- Chain C: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain D: T.112, F.113
- Ligands: PO4.5
13 PLIP interactions:11 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:N.23, C:S.56, C:W.57, C:E.58, C:V.80, C:I.82, C:H.88, D:F.113, D:F.113
- Water bridges: C:V.80, C:V.80
- pi-Stacking: C:F.22, C:F.22
RDL.8: 14 residues within 4Å:- Chain D: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain E: T.112, F.113
- Ligands: PO4.7
13 PLIP interactions:10 interactions with chain D, 3 interactions with chain E- Hydrogen bonds: D:S.20, D:N.23, D:S.56, D:W.57, D:E.58, D:V.80, D:I.82, E:F.113, E:F.113
- Water bridges: D:V.80, E:E.138
- pi-Stacking: D:F.22, D:F.22
RDL.10: 14 residues within 4Å:- Chain A: T.112, F.113
- Chain E: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Ligands: PO4.9
11 PLIP interactions:9 interactions with chain E, 2 interactions with chain A- Hydrogen bonds: E:S.20, E:N.23, E:S.56, E:W.57, E:E.58, E:V.80, E:I.82, A:F.113, A:F.113
- pi-Stacking: E:F.22, E:F.22
RDL.12: 14 residues within 4Å:- Chain F: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain G: T.112, F.113
- Ligands: PO4.11
12 PLIP interactions:10 interactions with chain F, 2 interactions with chain G- Hydrogen bonds: F:S.20, F:N.23, F:S.56, F:W.57, F:E.58, F:V.80, F:I.82, F:H.88, G:F.113, G:F.113
- pi-Stacking: F:F.22, F:F.22
RDL.14: 14 residues within 4Å:- Chain G: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain H: T.112, F.113
- Ligands: PO4.13
11 PLIP interactions:9 interactions with chain G, 2 interactions with chain H- Hydrogen bonds: G:N.23, G:S.56, G:W.57, G:E.58, G:V.80, G:I.82, G:H.88, H:F.113, H:F.113
- pi-Stacking: G:F.22, G:F.22
RDL.16: 14 residues within 4Å:- Chain H: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain I: T.112, F.113
- Ligands: PO4.15
13 PLIP interactions:11 interactions with chain H, 2 interactions with chain I- Hydrogen bonds: H:N.23, H:S.56, H:W.57, H:E.58, H:V.80, H:I.82, H:H.88, I:F.113, I:F.113
- Water bridges: H:V.80, H:V.80
- pi-Stacking: H:F.22, H:F.22
RDL.18: 14 residues within 4Å:- Chain I: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain J: T.112, F.113
- Ligands: PO4.17
13 PLIP interactions:3 interactions with chain J, 10 interactions with chain I- Hydrogen bonds: J:F.113, J:F.113, I:S.20, I:N.23, I:S.56, I:W.57, I:E.58, I:V.80, I:I.82
- Water bridges: J:E.138, I:V.80
- pi-Stacking: I:F.22, I:F.22
RDL.20: 14 residues within 4Å:- Chain F: T.112, F.113
- Chain J: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Ligands: PO4.19
11 PLIP interactions:9 interactions with chain J, 2 interactions with chain F- Hydrogen bonds: J:S.20, J:N.23, J:S.56, J:W.57, J:E.58, J:V.80, J:I.82, F:F.113, F:F.113
- pi-Stacking: J:F.22, J:F.22
RDL.22: 14 residues within 4Å:- Chain K: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain L: T.112, F.113
- Ligands: PO4.21
12 PLIP interactions:3 interactions with chain L, 9 interactions with chain K- Hydrogen bonds: L:F.113, L:F.113, K:S.20, K:N.23, K:S.56, K:W.57, K:E.58, K:V.80, K:I.82
- Water bridges: L:E.138
- pi-Stacking: K:F.22, K:F.22
RDL.24: 14 residues within 4Å:- Chain L: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain M: T.112, F.113
- Ligands: PO4.23
11 PLIP interactions:8 interactions with chain L, 3 interactions with chain M- Hydrogen bonds: L:N.23, L:S.56, L:W.57, L:E.58, L:V.80, L:I.82, M:F.113, M:F.113
- pi-Stacking: L:F.22, L:F.22
- Water bridges: M:E.138
RDL.26: 14 residues within 4Å:- Chain M: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain N: T.112, F.113
- Ligands: PO4.25
13 PLIP interactions:10 interactions with chain M, 3 interactions with chain N- Hydrogen bonds: M:N.23, M:S.56, M:W.57, M:E.58, M:V.80, M:I.82, N:F.113, N:F.113
- Water bridges: M:V.80, M:V.80, N:E.138
- pi-Stacking: M:F.22, M:F.22
RDL.28: 14 residues within 4Å:- Chain N: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain O: T.112, F.113
- Ligands: PO4.27
13 PLIP interactions:2 interactions with chain O, 11 interactions with chain N- Hydrogen bonds: O:F.113, O:F.113, N:S.20, N:N.23, N:S.56, N:W.57, N:E.58, N:V.80, N:I.82, N:H.88
- Water bridges: N:V.80
- pi-Stacking: N:F.22, N:F.22
RDL.30: 14 residues within 4Å:- Chain K: T.112, F.113
- Chain O: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Ligands: PO4.29
13 PLIP interactions:10 interactions with chain O, 3 interactions with chain K- Hydrogen bonds: O:S.20, O:N.23, O:S.56, O:W.57, O:E.58, O:V.80, O:I.82, O:H.88, K:F.113, K:F.113
- pi-Stacking: O:F.22, O:F.22
- Water bridges: K:E.138
RDL.32: 14 residues within 4Å:- Chain P: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain Q: T.112, F.113
- Ligands: PO4.31
12 PLIP interactions:9 interactions with chain P, 3 interactions with chain Q- Hydrogen bonds: P:S.20, P:N.23, P:S.56, P:W.57, P:E.58, P:V.80, P:I.82, Q:F.113, Q:F.113
- pi-Stacking: P:F.22, P:F.22
- Water bridges: Q:E.138
RDL.34: 14 residues within 4Å:- Chain Q: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain R: T.112, F.113
- Ligands: PO4.33
11 PLIP interactions:8 interactions with chain Q, 3 interactions with chain R- Hydrogen bonds: Q:N.23, Q:S.56, Q:W.57, Q:E.58, Q:V.80, Q:I.82, R:F.113, R:F.113
- pi-Stacking: Q:F.22, Q:F.22
- Water bridges: R:E.138
RDL.36: 14 residues within 4Å:- Chain R: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain S: T.112, F.113
- Ligands: PO4.35
13 PLIP interactions:10 interactions with chain R, 3 interactions with chain S- Hydrogen bonds: R:N.23, R:S.56, R:W.57, R:E.58, R:V.80, R:I.82, S:F.113, S:F.113
- Water bridges: R:V.80, R:V.80, S:E.138
- pi-Stacking: R:F.22, R:F.22
RDL.38: 14 residues within 4Å:- Chain S: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain T: T.112, F.113
- Ligands: PO4.37
13 PLIP interactions:11 interactions with chain S, 2 interactions with chain T- Hydrogen bonds: S:S.20, S:N.23, S:S.56, S:W.57, S:E.58, S:V.80, S:I.82, S:H.88, T:F.113, T:F.113
- Water bridges: S:V.80
- pi-Stacking: S:F.22, S:F.22
RDL.40: 14 residues within 4Å:- Chain P: T.112, F.113
- Chain T: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Ligands: PO4.39
13 PLIP interactions:10 interactions with chain T, 3 interactions with chain P- Hydrogen bonds: T:S.20, T:N.23, T:S.56, T:W.57, T:E.58, T:V.80, T:I.82, T:H.88, P:F.113, P:F.113
- pi-Stacking: T:F.22, T:F.22
- Water bridges: P:E.138
RDL.42: 14 residues within 4Å:- Chain U: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain V: T.112, F.113
- Ligands: PO4.41
12 PLIP interactions:10 interactions with chain U, 2 interactions with chain V- Hydrogen bonds: U:S.20, U:N.23, U:S.56, U:W.57, U:E.58, U:V.80, U:I.82, U:H.88, V:F.113, V:F.113
- pi-Stacking: U:F.22, U:F.22
RDL.44: 14 residues within 4Å:- Chain V: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain W: T.112, F.113
- Ligands: PO4.43
12 PLIP interactions:3 interactions with chain W, 9 interactions with chain V- Hydrogen bonds: W:F.113, W:F.113, V:N.23, V:S.56, V:W.57, V:E.58, V:V.80, V:I.82, V:H.88
- Water bridges: W:E.138
- pi-Stacking: V:F.22, V:F.22
RDL.46: 14 residues within 4Å:- Chain W: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain X: T.112, F.113
- Ligands: PO4.45
13 PLIP interactions:10 interactions with chain W, 3 interactions with chain X- Hydrogen bonds: W:N.23, W:S.56, W:W.57, W:E.58, W:V.80, W:I.82, X:F.113, X:F.113
- Water bridges: W:V.80, W:V.80, X:E.138
- pi-Stacking: W:F.22, W:F.22
RDL.48: 14 residues within 4Å:- Chain X: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain Y: T.112, F.113
- Ligands: PO4.47
13 PLIP interactions:10 interactions with chain X, 3 interactions with chain Y- Hydrogen bonds: X:S.20, X:N.23, X:S.56, X:W.57, X:E.58, X:V.80, X:I.82, Y:F.113, Y:F.113
- Water bridges: X:V.80, Y:E.138
- pi-Stacking: X:F.22, X:F.22
RDL.50: 14 residues within 4Å:- Chain U: T.112, F.113
- Chain Y: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Ligands: PO4.49
12 PLIP interactions:10 interactions with chain Y, 2 interactions with chain U- Hydrogen bonds: Y:S.20, Y:N.23, Y:S.56, Y:W.57, Y:E.58, Y:V.80, Y:I.82, Y:H.88, U:F.113, U:F.113
- pi-Stacking: Y:F.22, Y:F.22
RDL.52: 14 residues within 4Å:- Chain 0: T.112, F.113
- Chain Z: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Ligands: PO4.51
12 PLIP interactions:9 interactions with chain Z, 3 interactions with chain 0- Hydrogen bonds: Z:S.20, Z:N.23, Z:S.56, Z:W.57, Z:E.58, Z:V.80, Z:I.82, 0:F.113, 0:F.113
- pi-Stacking: Z:F.22, Z:F.22
- Water bridges: 0:E.138
RDL.54: 14 residues within 4Å:- Chain 0: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain 1: T.112, F.113
- Ligands: PO4.53
10 PLIP interactions:8 interactions with chain 0, 2 interactions with chain 1- Hydrogen bonds: 0:N.23, 0:S.56, 0:W.57, 0:E.58, 0:V.80, 0:I.82, 1:F.113, 1:F.113
- pi-Stacking: 0:F.22, 0:F.22
RDL.56: 14 residues within 4Å:- Chain 1: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain 2: T.112, F.113
- Ligands: PO4.55
13 PLIP interactions:2 interactions with chain 2, 11 interactions with chain 1- Hydrogen bonds: 2:F.113, 2:F.113, 1:N.23, 1:S.56, 1:W.57, 1:E.58, 1:V.80, 1:I.82, 1:H.88
- Water bridges: 1:V.80, 1:V.80
- pi-Stacking: 1:F.22, 1:F.22
RDL.58: 14 residues within 4Å:- Chain 2: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain 3: T.112, F.113
- Ligands: PO4.57
13 PLIP interactions:2 interactions with chain 3, 11 interactions with chain 2- Hydrogen bonds: 3:F.113, 3:F.113, 2:S.20, 2:N.23, 2:S.56, 2:W.57, 2:E.58, 2:V.80, 2:I.82, 2:H.88
- Water bridges: 2:V.80
- pi-Stacking: 2:F.22, 2:F.22
RDL.60: 14 residues within 4Å:- Chain 3: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain Z: T.112, F.113
- Ligands: PO4.59
12 PLIP interactions:3 interactions with chain Z, 9 interactions with chain 3- Hydrogen bonds: Z:F.113, Z:F.113, 3:S.20, 3:N.23, 3:S.56, 3:W.57, 3:E.58, 3:V.80, 3:I.82
- Water bridges: Z:E.138
- pi-Stacking: 3:F.22, 3:F.22
RDL.62: 14 residues within 4Å:- Chain 4: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain 5: T.112, F.113
- Ligands: PO4.61
12 PLIP interactions:10 interactions with chain 4, 2 interactions with chain 5- Hydrogen bonds: 4:S.20, 4:N.23, 4:S.56, 4:W.57, 4:E.58, 4:V.80, 4:I.82, 4:H.88, 5:F.113, 5:F.113
- pi-Stacking: 4:F.22, 4:F.22
RDL.64: 14 residues within 4Å:- Chain 5: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain 6: T.112, F.113
- Ligands: PO4.63
12 PLIP interactions:9 interactions with chain 5, 3 interactions with chain 6- Hydrogen bonds: 5:N.23, 5:S.56, 5:W.57, 5:E.58, 5:V.80, 5:I.82, 5:H.88, 6:F.113, 6:F.113
- pi-Stacking: 5:F.22, 5:F.22
- Water bridges: 6:E.138
RDL.66: 14 residues within 4Å:- Chain 6: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain 7: T.112, F.113
- Ligands: PO4.65
13 PLIP interactions:10 interactions with chain 6, 3 interactions with chain 7- Hydrogen bonds: 6:N.23, 6:S.56, 6:W.57, 6:E.58, 6:V.80, 6:I.82, 7:F.113, 7:F.113
- Water bridges: 6:V.80, 6:V.80, 7:E.138
- pi-Stacking: 6:F.22, 6:F.22
RDL.68: 14 residues within 4Å:- Chain 7: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain 8: T.112, F.113
- Ligands: PO4.67
13 PLIP interactions:10 interactions with chain 7, 3 interactions with chain 8- Hydrogen bonds: 7:S.20, 7:N.23, 7:S.56, 7:W.57, 7:E.58, 7:V.80, 7:I.82, 8:F.113, 8:F.113
- Water bridges: 7:V.80, 8:E.138
- pi-Stacking: 7:F.22, 7:F.22
RDL.70: 14 residues within 4Å:- Chain 4: T.112, F.113
- Chain 8: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Ligands: PO4.69
12 PLIP interactions:10 interactions with chain 8, 2 interactions with chain 4- Hydrogen bonds: 8:S.20, 8:N.23, 8:S.56, 8:W.57, 8:E.58, 8:V.80, 8:I.82, 8:H.88, 4:F.113, 4:F.113
- pi-Stacking: 8:F.22, 8:F.22
RDL.72: 14 residues within 4Å:- Chain 9: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Ligands: PO4.71
- Chain a: T.112, F.113
12 PLIP interactions:9 interactions with chain 9, 3 interactions with chain a- Hydrogen bonds: 9:S.20, 9:N.23, 9:S.56, 9:W.57, 9:E.58, 9:V.80, 9:I.82, a:F.113, a:F.113
- pi-Stacking: 9:F.22, 9:F.22
- Water bridges: a:E.138
RDL.74: 14 residues within 4Å:- Ligands: PO4.73
- Chain a: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain b: T.112, F.113
10 PLIP interactions:8 interactions with chain a, 2 interactions with chain b- Hydrogen bonds: a:N.23, a:S.56, a:W.57, a:E.58, a:V.80, a:I.82, b:F.113, b:F.113
- pi-Stacking: a:F.22, a:F.22
RDL.76: 14 residues within 4Å:- Ligands: PO4.75
- Chain b: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain c: T.112, F.113
13 PLIP interactions:11 interactions with chain b, 2 interactions with chain c- Hydrogen bonds: b:N.23, b:S.56, b:W.57, b:E.58, b:V.80, b:I.82, b:H.88, c:F.113, c:F.113
- Water bridges: b:V.80, b:V.80
- pi-Stacking: b:F.22, b:F.22
RDL.78: 14 residues within 4Å:- Ligands: PO4.77
- Chain c: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain d: T.112, F.113
13 PLIP interactions:11 interactions with chain c, 2 interactions with chain d- Hydrogen bonds: c:S.20, c:N.23, c:S.56, c:W.57, c:E.58, c:V.80, c:I.82, c:H.88, d:F.113, d:F.113
- Water bridges: c:V.80
- pi-Stacking: c:F.22, c:F.22
RDL.80: 14 residues within 4Å:- Chain 9: T.112, F.113
- Ligands: PO4.79
- Chain d: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
12 PLIP interactions:9 interactions with chain d, 3 interactions with chain 9- Hydrogen bonds: d:S.20, d:N.23, d:S.56, d:W.57, d:E.58, d:V.80, d:I.82, 9:F.113, 9:F.113
- pi-Stacking: d:F.22, d:F.22
- Water bridges: 9:E.138
RDL.82: 14 residues within 4Å:- Ligands: PO4.81
- Chain e: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain f: T.112, F.113
13 PLIP interactions:10 interactions with chain e, 3 interactions with chain f- Hydrogen bonds: e:S.20, e:N.23, e:S.56, e:W.57, e:E.58, e:V.80, e:I.82, e:H.88, f:F.113, f:F.113
- pi-Stacking: e:F.22, e:F.22
- Water bridges: f:E.138
RDL.84: 14 residues within 4Å:- Ligands: PO4.83
- Chain f: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain g: T.112, F.113
11 PLIP interactions:8 interactions with chain f, 3 interactions with chain g- Hydrogen bonds: f:N.23, f:S.56, f:W.57, f:E.58, f:V.80, f:I.82, g:F.113, g:F.113
- pi-Stacking: f:F.22, f:F.22
- Water bridges: g:E.138
RDL.86: 14 residues within 4Å:- Ligands: PO4.85
- Chain g: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain h: T.112, F.113
12 PLIP interactions:10 interactions with chain g, 2 interactions with chain h- Hydrogen bonds: g:N.23, g:S.56, g:W.57, g:E.58, g:V.80, g:I.82, h:F.113, h:F.113
- Water bridges: g:V.80, g:V.80
- pi-Stacking: g:F.22, g:F.22
RDL.88: 14 residues within 4Å:- Ligands: PO4.87
- Chain h: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain i: T.112, F.113
13 PLIP interactions:11 interactions with chain h, 2 interactions with chain i- Hydrogen bonds: h:S.20, h:N.23, h:S.56, h:W.57, h:E.58, h:V.80, h:I.82, h:H.88, i:F.113, i:F.113
- Water bridges: h:V.80
- pi-Stacking: h:F.22, h:F.22
RDL.90: 14 residues within 4Å:- Ligands: PO4.89
- Chain e: T.112, F.113
- Chain i: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
12 PLIP interactions:10 interactions with chain i, 2 interactions with chain e- Hydrogen bonds: i:S.20, i:N.23, i:S.56, i:W.57, i:E.58, i:V.80, i:I.82, i:H.88, e:F.113, e:F.113
- pi-Stacking: i:F.22, i:F.22
RDL.92: 14 residues within 4Å:- Ligands: PO4.91
- Chain j: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain k: T.112, F.113
11 PLIP interactions:9 interactions with chain j, 2 interactions with chain k- Hydrogen bonds: j:S.20, j:N.23, j:S.56, j:W.57, j:E.58, j:V.80, j:I.82, k:F.113, k:F.113
- pi-Stacking: j:F.22, j:F.22
RDL.94: 14 residues within 4Å:- Ligands: PO4.93
- Chain k: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain l: T.112, F.113
11 PLIP interactions:9 interactions with chain k, 2 interactions with chain l- Hydrogen bonds: k:N.23, k:S.56, k:W.57, k:E.58, k:V.80, k:I.82, k:H.88, l:F.113, l:F.113
- pi-Stacking: k:F.22, k:F.22
RDL.96: 14 residues within 4Å:- Ligands: PO4.95
- Chain l: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain m: T.112, F.113
14 PLIP interactions:11 interactions with chain l, 3 interactions with chain m- Hydrogen bonds: l:N.23, l:S.56, l:W.57, l:E.58, l:V.80, l:I.82, l:H.88, m:F.113, m:F.113
- Water bridges: l:V.80, l:V.80, m:E.138
- pi-Stacking: l:F.22, l:F.22
RDL.98: 14 residues within 4Å:- Ligands: PO4.97
- Chain m: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain n: T.112, F.113
13 PLIP interactions:10 interactions with chain m, 3 interactions with chain n- Hydrogen bonds: m:S.20, m:N.23, m:S.56, m:W.57, m:E.58, m:V.80, m:I.82, n:F.113, n:F.113
- Water bridges: m:V.80, n:E.138
- pi-Stacking: m:F.22, m:F.22
RDL.100: 14 residues within 4Å:- Ligands: PO4.99
- Chain j: T.112, F.113
- Chain n: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
12 PLIP interactions:9 interactions with chain n, 3 interactions with chain j- Hydrogen bonds: n:S.20, n:N.23, n:S.56, n:W.57, n:E.58, n:V.80, n:I.82, j:F.113, j:F.113
- pi-Stacking: n:F.22, n:F.22
- Water bridges: j:E.138
RDL.102: 14 residues within 4Å:- Ligands: PO4.101
- Chain o: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain p: T.112, F.113
11 PLIP interactions:9 interactions with chain o, 2 interactions with chain p- Hydrogen bonds: o:S.20, o:N.23, o:S.56, o:W.57, o:E.58, o:V.80, o:I.82, p:F.113, p:F.113
- pi-Stacking: o:F.22, o:F.22
RDL.104: 14 residues within 4Å:- Ligands: PO4.103
- Chain p: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain q: T.112, F.113
11 PLIP interactions:9 interactions with chain p, 2 interactions with chain q- Hydrogen bonds: p:N.23, p:S.56, p:W.57, p:E.58, p:V.80, p:I.82, p:H.88, q:F.113, q:F.113
- pi-Stacking: p:F.22, p:F.22
RDL.106: 14 residues within 4Å:- Ligands: PO4.105
- Chain q: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain r: T.112, F.113
14 PLIP interactions:11 interactions with chain q, 3 interactions with chain r- Hydrogen bonds: q:N.23, q:S.56, q:W.57, q:E.58, q:V.80, q:I.82, q:H.88, r:F.113, r:F.113
- Water bridges: q:V.80, q:V.80, r:E.138
- pi-Stacking: q:F.22, q:F.22
RDL.108: 14 residues within 4Å:- Ligands: PO4.107
- Chain r: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain s: T.112, F.113
13 PLIP interactions:10 interactions with chain r, 3 interactions with chain s- Hydrogen bonds: r:S.20, r:N.23, r:S.56, r:W.57, r:E.58, r:V.80, r:I.82, s:F.113, s:F.113
- Water bridges: r:V.80, s:E.138
- pi-Stacking: r:F.22, r:F.22
RDL.110: 14 residues within 4Å:- Ligands: PO4.109
- Chain o: T.112, F.113
- Chain s: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
12 PLIP interactions:9 interactions with chain s, 3 interactions with chain o- Hydrogen bonds: s:S.20, s:N.23, s:S.56, s:W.57, s:E.58, s:V.80, s:I.82, o:F.113, o:F.113
- pi-Stacking: s:F.22, s:F.22
- Water bridges: o:E.138
RDL.112: 14 residues within 4Å:- Ligands: PO4.111
- Chain t: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain u: T.112, F.113
13 PLIP interactions:10 interactions with chain t, 3 interactions with chain u- Hydrogen bonds: t:S.20, t:N.23, t:S.56, t:W.57, t:E.58, t:V.80, t:I.82, t:H.88, u:F.113, u:F.113
- pi-Stacking: t:F.22, t:F.22
- Water bridges: u:E.138
RDL.114: 14 residues within 4Å:- Ligands: PO4.113
- Chain u: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain v: T.112, F.113
11 PLIP interactions:8 interactions with chain u, 3 interactions with chain v- Hydrogen bonds: u:N.23, u:S.56, u:W.57, u:E.58, u:V.80, u:I.82, v:F.113, v:F.113
- pi-Stacking: u:F.22, u:F.22
- Water bridges: v:E.138
RDL.116: 14 residues within 4Å:- Ligands: PO4.115
- Chain v: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain w: T.112, F.113
12 PLIP interactions:10 interactions with chain v, 2 interactions with chain w- Hydrogen bonds: v:N.23, v:S.56, v:W.57, v:E.58, v:V.80, v:I.82, w:F.113, w:F.113
- Water bridges: v:V.80, v:V.80
- pi-Stacking: v:F.22, v:F.22
RDL.118: 14 residues within 4Å:- Ligands: PO4.117
- Chain w: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
- Chain x: T.112, F.113
13 PLIP interactions:11 interactions with chain w, 2 interactions with chain x- Hydrogen bonds: w:S.20, w:N.23, w:S.56, w:W.57, w:E.58, w:V.80, w:I.82, w:H.88, x:F.113, x:F.113
- Water bridges: w:V.80
- pi-Stacking: w:F.22, w:F.22
RDL.120: 14 residues within 4Å:- Ligands: PO4.119
- Chain t: T.112, F.113
- Chain x: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92
12 PLIP interactions:10 interactions with chain x, 2 interactions with chain t- Hydrogen bonds: x:S.20, x:N.23, x:S.56, x:W.57, x:E.58, x:V.80, x:I.82, x:H.88, t:F.113, t:F.113
- pi-Stacking: x:F.22, x:F.22
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, X. et al., A structure-based model of the reaction catalyzed by lumazine synthase from Aquifex aeolicus. J.Mol.Biol. (2003)
- Release Date
- 2004-01-23
- Peptides
- 6,7-dimethyl-8-ribityllumazine synthase: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789abcdefghijklmnopqrstuvwx
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
EK
AL
BM
CN
DO
EP
AQ
BR
CS
DT
EU
AV
BW
CX
DY
EZ
A0
B1
C2
D3
E4
A5
B6
C7
D8
E9
Aa
Bb
Cc
Dd
Ee
Af
Bg
Ch
Di
Ej
Ak
Bl
Cm
Dn
Eo
Ap
Bq
Cr
Ds
Et
Au
Bv
Cw
Dx
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-60-mer
- Ligands
- 60 x PO4: PHOSPHATE ION(Non-functional Binders)
- 60 x RDL: 6,7-DIOXO-5H-8-RIBITYLAMINOLUMAZINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, X. et al., A structure-based model of the reaction catalyzed by lumazine synthase from Aquifex aeolicus. J.Mol.Biol. (2003)
- Release Date
- 2004-01-23
- Peptides
- 6,7-dimethyl-8-ribityllumazine synthase: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789abcdefghijklmnopqrstuvwx
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
EK
AL
BM
CN
DO
EP
AQ
BR
CS
DT
EU
AV
BW
CX
DY
EZ
A0
B1
C2
D3
E4
A5
B6
C7
D8
E9
Aa
Bb
Cc
Dd
Ee
Af
Bg
Ch
Di
Ej
Ak
Bl
Cm
Dn
Eo
Ap
Bq
Cr
Ds
Et
Au
Bv
Cw
Dx
E