SMTL ID : 1nqu.1

Crystal Structure of Lumazine Synthase from Aquifex aeolicus in Complex with Inhibitor: 6,7-dioxo-5H-8-ribitylaminolumazine

PO4.1: 6 residues within 4Å: Chain A: G.84, A.85, T.86 Chain B: R.127, K.135 Ligands: RDL.6 Ligand excluded by PLIP PO4.2: 6 residues within 4Å: Chain B: G.84, A.85, T.86 Chain C: R.127, K.135 Ligands: RDL.7 Ligand excluded by PLIP PO4.3: 6 residues within 4Å: Chain C: G.84, A.85, T.86 Chain D: R.127, K.135 Ligands: RDL.8 Ligand excluded by PLIP PO4.4: 6 residues within 4Å: Chain D: G.84, A.85, T.86 Chain E: R.127, K.135 Ligands: RDL.9 Ligand excluded by PLIP PO4.5: 6 residues within 4Å: Chain A: R.127, K.135 Chain E: G.84, A.85, T.86 Ligands: RDL.10 Ligand excluded by PLIP PO4.11: 6 residues within 4Å: Chain F: G.84, A.85, T.86 Chain G: R.127, K.135 Ligands: RDL.16 Ligand excluded by PLIP PO4.12: 6 residues within 4Å: Chain G: G.84, A.85, T.86 Chain H: R.127, K.135 Ligands: RDL.17 Ligand excluded by PLIP PO4.13: 6 residues within 4Å: Chain H: G.84, A.85, T.86 Chain I: R.127, K.135 Ligands: RDL.18 Ligand excluded by PLIP PO4.14: 6 residues within 4Å: Chain I: G.84, A.85, T.86 Chain J: R.127, K.135 Ligands: RDL.19 Ligand excluded by PLIP PO4.15: 6 residues within 4Å: Chain F: R.127, K.135 Chain J: G.84, A.85, T.86 Ligands: RDL.20 Ligand excluded by PLIP PO4.21: 6 residues within 4Å: Chain K: G.84, A.85, T.86 Chain L: R.127, K.135 Ligands: RDL.26 Ligand excluded by PLIP PO4.22: 6 residues within 4Å: Chain L: G.84, A.85, T.86 Chain M: R.127, K.135 Ligands: RDL.27 Ligand excluded by PLIP PO4.23: 6 residues within 4Å: Chain M: G.84, A.85, T.86 Chain N: R.127, K.135 Ligands: RDL.28 Ligand excluded by PLIP PO4.24: 6 residues within 4Å: Chain N: G.84, A.85, T.86 Chain O: R.127, K.135 Ligands: RDL.29 Ligand excluded by PLIP PO4.25: 6 residues within 4Å: Chain K: R.127, K.135 Chain O: G.84, A.85, T.86 Ligands: RDL.30 Ligand excluded by PLIP PO4.31: 6 residues within 4Å: Chain P: G.84, A.85, T.86 Chain Q: R.127, K.135 Ligands: RDL.36 Ligand excluded by PLIP PO4.32: 6 residues within 4Å: Chain Q: G.84, A.85, T.86 Chain R: R.127, K.135 Ligands: RDL.37 Ligand excluded by PLIP PO4.33: 6 residues within 4Å: Chain R: G.84, A.85, T.86 Chain S: R.127, K.135 Ligands: RDL.38 Ligand excluded by PLIP PO4.34: 6 residues within 4Å: Chain S: G.84, A.85, T.86 Chain T: R.127, K.135 Ligands: RDL.39 Ligand excluded by PLIP PO4.35: 6 residues within 4Å: Chain P: R.127, K.135 Chain T: G.84, A.85, T.86 Ligands: RDL.40 Ligand excluded by PLIP PO4.41: 6 residues within 4Å: Chain U: G.84, A.85, T.86 Chain V: R.127, K.135 Ligands: RDL.46 Ligand excluded by PLIP PO4.42: 6 residues within 4Å: Chain V: G.84, A.85, T.86 Chain W: R.127, K.135 Ligands: RDL.47 Ligand excluded by PLIP PO4.43: 6 residues within 4Å: Chain W: G.84, A.85, T.86 Chain X: R.127, K.135 Ligands: RDL.48 Ligand excluded by PLIP PO4.44: 6 residues within 4Å: Chain X: G.84, A.85, T.86 Chain Y: R.127, K.135 Ligands: RDL.49 Ligand excluded by PLIP PO4.45: 6 residues within 4Å: Chain U: R.127, K.135 Chain Y: G.84, A.85, T.86 Ligands: RDL.50 Ligand excluded by PLIP PO4.51: 6 residues within 4Å: Chain 0: R.127, K.135 Chain Z: G.84, A.85, T.86 Ligands: RDL.56 Ligand excluded by PLIP PO4.52: 6 residues within 4Å: Chain 0: G.84, A.85, T.86 Chain 1: R.127, K.135 Ligands: RDL.57 Ligand excluded by PLIP PO4.53: 6 residues within 4Å: Chain 1: G.84, A.85, T.86 Chain 2: R.127, K.135 Ligands: RDL.58 Ligand excluded by PLIP PO4.54: 6 residues within 4Å: Chain 2: G.84, A.85, T.86 Chain 3: R.127, K.135 Ligands: RDL.59 Ligand excluded by PLIP PO4.55: 6 residues within 4Å: Chain 3: G.84, A.85, T.86 Chain Z: R.127, K.135 Ligands: RDL.60 Ligand excluded by PLIP PO4.61: 6 residues within 4Å: Chain 4: G.84, A.85, T.86 Chain 5: R.127, K.135 Ligands: RDL.66 Ligand excluded by PLIP PO4.62: 6 residues within 4Å: Chain 5: G.84, A.85, T.86 Chain 6: R.127, K.135 Ligands: RDL.67 Ligand excluded by PLIP PO4.63: 6 residues within 4Å: Chain 6: G.84, A.85, T.86 Chain 7: R.127, K.135 Ligands: RDL.68 Ligand excluded by PLIP PO4.64: 6 residues within 4Å: Chain 7: G.84, A.85, T.86 Chain 8: R.127, K.135 Ligands: RDL.69 Ligand excluded by PLIP PO4.65: 6 residues within 4Å: Chain 4: R.127, K.135 Chain 8: G.84, A.85, T.86 Ligands: RDL.70 Ligand excluded by PLIP PO4.71: 6 residues within 4Å: Chain 9: G.84, A.85, T.86 Ligands: RDL.76 Chain a: R.127, K.135 Ligand excluded by PLIP PO4.72: 6 residues within 4Å: Ligands: RDL.77 Chain a: G.84, A.85, T.86 Chain b: R.127, K.135 Ligand excluded by PLIP PO4.73: 6 residues within 4Å: Ligands: RDL.78 Chain b: G.84, A.85, T.86 Chain c: R.127, K.135 Ligand excluded by PLIP PO4.74: 6 residues within 4Å: Ligands: RDL.79 Chain c: G.84, A.85, T.86 Chain d: R.127, K.135 Ligand excluded by PLIP PO4.75: 6 residues within 4Å: Chain 9: R.127, K.135 Ligands: RDL.80 Chain d: G.84, A.85, T.86 Ligand excluded by PLIP PO4.81: 6 residues within 4Å: Ligands: RDL.86 Chain e: G.84, A.85, T.86 Chain f: R.127, K.135 Ligand excluded by PLIP PO4.82: 6 residues within 4Å: Ligands: RDL.87 Chain f: G.84, A.85, T.86 Chain g: R.127, K.135 Ligand excluded by PLIP PO4.83: 6 residues within 4Å: Ligands: RDL.88 Chain g: G.84, A.85, T.86 Chain h: R.127, K.135 Ligand excluded by PLIP PO4.84: 6 residues within 4Å: Ligands: RDL.89 Chain h: G.84, A.85, T.86 Chain i: R.127, K.135 Ligand excluded by PLIP PO4.85: 6 residues within 4Å: Ligands: RDL.90 Chain e: R.127, K.135 Chain i: G.84, A.85, T.86 Ligand excluded by PLIP PO4.91: 6 residues within 4Å: Ligands: RDL.96 Chain j: G.84, A.85, T.86 Chain k: R.127, K.135 Ligand excluded by PLIP PO4.92: 6 residues within 4Å: Ligands: RDL.97 Chain k: G.84, A.85, T.86 Chain l: R.127, K.135 Ligand excluded by PLIP PO4.93: 6 residues within 4Å: Ligands: RDL.98 Chain l: G.84, A.85, T.86 Chain m: R.127, K.135 Ligand excluded by PLIP PO4.94: 6 residues within 4Å: Ligands: RDL.99 Chain m: G.84, A.85, T.86 Chain n: R.127, K.135 Ligand excluded by PLIP PO4.95: 6 residues within 4Å: Ligands: RDL.100 Chain j: R.127, K.135 Chain n: G.84, A.85, T.86 Ligand excluded by PLIP PO4.101: 6 residues within 4Å: Ligands: RDL.106 Chain o: G.84, A.85, T.86 Chain p: R.127, K.135 Ligand excluded by PLIP PO4.102: 6 residues within 4Å: Ligands: RDL.107 Chain p: G.84, A.85, T.86 Chain q: R.127, K.135 Ligand excluded by PLIP PO4.103: 6 residues within 4Å: Ligands: RDL.108 Chain q: G.84, A.85, T.86 Chain r: R.127, K.135 Ligand excluded by PLIP PO4.104: 6 residues within 4Å: Ligands: RDL.109 Chain r: G.84, A.85, T.86 Chain s: R.127, K.135 Ligand excluded by PLIP PO4.105: 6 residues within 4Å: Ligands: RDL.110 Chain o: R.127, K.135 Chain s: G.84, A.85, T.86 Ligand excluded by PLIP PO4.111: 6 residues within 4Å: Ligands: RDL.116 Chain t: G.84, A.85, T.86 Chain u: R.127, K.135 Ligand excluded by PLIP PO4.112: 6 residues within 4Å: Ligands: RDL.117 Chain u: G.84, A.85, T.86 Chain v: R.127, K.135 Ligand excluded by PLIP PO4.113: 6 residues within 4Å: Ligands: RDL.118 Chain v: G.84, A.85, T.86 Chain w: R.127, K.135 Ligand excluded by PLIP PO4.114: 6 residues within 4Å: Ligands: RDL.119 Chain w: G.84, A.85, T.86 Chain x: R.127, K.135 Ligand excluded by PLIP PO4.115: 6 residues within 4Å: Ligands: RDL.120 Chain t: R.127, K.135 Chain x: G.84, A.85, T.86 Ligand excluded by PLIP

RDL.6: 14 residues within 4Å: Chain A: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92 Chain B: T.112, F.113 Ligands: PO4.1 12 PLIP interactions: 10 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.20, A:N.23, A:S.56, A:W.57, A:E.58, A:V.80, A:I.82, A:H.88, B:F.113, B:F.113 pi-Stacking: A:F.22, A:F.22 RDL.7: 14 residues within 4Å: Chain B: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92 Chain C: T.112, F.113 Ligands: PO4.2 11 PLIP interactions: 9 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:N.23, B:S.56, B:W.57, B:E.58, B:V.80, B:I.82, B:H.88, C:F.113, C:F.113 pi-Stacking: B:F.22, B:F.22 RDL.8: 14 residues within 4Å: Chain C: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92 Chain D: T.112, F.113 Ligands: PO4.3 12 PLIP interactions: 10 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:N.23, C:S.56, C:W.57, C:E.58, C:V.80, C:I.82, C:H.88, D:F.113, D:F.113 Water bridges: C:V.80, C:V.80 pi-Stacking: C:F.22 RDL.9: 14 residues within 4Å: Chain D: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92 Chain E: T.112, F.113 Ligands: PO4.4 13 PLIP interactions: 10 interactions with chain D, 3 interactions with chain E Hydrogen bonds: D:S.20, D:N.23, D:S.56, D:W.57, D:E.58, D:V.80, D:I.82, E:F.113, E:F.113 Water bridges: D:V.80, E:E.138 pi-Stacking: D:F.22, D:F.22 RDL.10: 14 residues within 4Å: Chain A: T.112, F.113 Chain E: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92 Ligands: PO4.5 10 PLIP interactions: 8 interactions with chain E, 2 interactions with chain A Hydrogen bonds: E:S.20, E:N.23, E:S.56, E:W.57, E:E.58, E:V.80, E:I.82, A:F.113, A:F.113 pi-Stacking: E:F.22 RDL.16: 14 residues within 4Å: Chain F: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92 Chain G: T.112, F.113 Ligands: PO4.11 12 PLIP interactions: 10 interactions with chain F, 2 interactions with chain G Hydrogen bonds: F:S.20, F:N.23, F:S.56, F:W.57, F:E.58, F:V.80, F:I.82, F:H.88, G:F.113, G:F.113 pi-Stacking: F:F.22, F:F.22 RDL.17: 14 residues within 4Å: Chain G: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92 Chain H: T.112, F.113 Ligands: PO4.12 11 PLIP interactions: 9 interactions with chain G, 2 interactions with chain H Hydrogen bonds: G:N.23, G:S.56, G:W.57, G:E.58, G:V.80, G:I.82, G:H.88, H:F.113, H:F.113 pi-Stacking: G:F.22, G:F.22 RDL.18: 14 residues within 4Å: Chain H: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92 Chain I: T.112, F.113 Ligands: PO4.13 12 PLIP interactions: 10 interactions with chain H, 2 interactions with chain I Hydrogen bonds: H:N.23, H:S.56, H:W.57, H:E.58, H:V.80, H:I.82, H:H.88, I:F.113, I:F.113 Water bridges: H:V.80, H:V.80 pi-Stacking: H:F.22 RDL.19: 14 residues within 4Å: Chain I: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92 Chain J: T.112, F.113 Ligands: PO4.14 13 PLIP interactions: 10 interactions with chain I, 3 interactions with chain J Hydrogen bonds: I:S.20, I:N.23, I:S.56, I:W.57, I:E.58, I:V.80, I:I.82, J:F.113, J:F.113 Water bridges: I:V.80, J:E.138 pi-Stacking: I:F.22, I:F.22 RDL.20: 14 residues within 4Å: Chain F: T.112, F.113 Chain J: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92 Ligands: PO4.15 10 PLIP interactions: 8 interactions with chain J, 2 interactions with chain F Hydrogen bonds: J:S.20, J:N.23, J:S.56, J:W.57, J:E.58, J:V.80, J:I.82, F:F.113, F:F.113 pi-Stacking: J:F.22 RDL.26: 14 residues within 4Å: Chain K: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92 Chain L: T.112, F.113 Ligands: PO4.21 12 PLIP interactions: 9 interactions with chain K, 3 interactions with chain L Hydrogen bonds: K:S.20, K:N.23, K:S.56, K:W.57, K:E.58, K:V.80, K:I.82, L:F.113, L:F.113 pi-Stacking: K:F.22, K:F.22 Water bridges: L:E.138 RDL.27: 14 residues within 4Å: Chain L: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92 Chain M: T.112, F.113 Ligands: PO4.22 11 PLIP interactions: 8 interactions with chain L, 3 interactions with chain M Hydrogen bonds: L:N.23, L:S.56, L:W.57, L:E.58, L:V.80, L:I.82, M:F.113, M:F.113 pi-Stacking: L:F.22, L:F.22 Water bridges: M:E.138 RDL.28: 14 residues within 4Å: Chain M: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92 Chain N: T.112, F.113 Ligands: PO4.23 12 PLIP interactions: 9 interactions with chain M, 3 interactions with chain N Hydrogen bonds: M:N.23, M:S.56, M:W.57, M:E.58, M:V.80, M:I.82, N:F.113, N:F.113 Water bridges: M:V.80, M:V.80, N:E.138 pi-Stacking: M:F.22 RDL.29: 14 residues within 4Å: Chain N: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92 Chain O: T.112, F.113 Ligands: PO4.24 13 PLIP interactions: 11 interactions with chain N, 2 interactions with chain O Hydrogen bonds: N:S.20, N:N.23, N:S.56, N:W.57, N:E.58, N:V.80, N:I.82, N:H.88, O:F.113, O:F.113 Water bridges: N:V.80 pi-Stacking: N:F.22, N:F.22 RDL.30: 14 residues within 4Å: Chain K: T.112, F.113 Chain O: F.22, N.23, G.55, S.56, W.57, E.58, V.80, L.81, I.82, H.88, I.92 Ligands: PO4.25 12 PLIP interactions: 3 interactions with chain K, 9 interactions with chain O Hydrogen bonds: K:F.113, K:F.113, O:S.20, O:N.23, O:S.56, O:W.57, O:E.58, O:V.80, O:I.82, O:H.88 Water bridges: