- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x CA: CALCIUM ION(Non-covalent)
CA.2: 5 residues within 4Å:- Chain A: D.217, T.221, D.248, G.268, G.270
6 PLIP interactions:5 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.217, A:T.221, A:D.248, A:G.268, A:G.270, H2O.7
CA.3: 5 residues within 4Å:- Chain A: E.92
- Chain B: E.92
- Chain C: E.92
- Chain D: E.92
- Ligands: CA.10
5 PLIP interactions:1 interactions with chain B, 1 interactions with chain D, 1 interactions with chain A, 1 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: B:E.92, D:E.92, A:E.92, C:E.92, H2O.33
CA.6: 5 residues within 4Å:- Chain B: D.217, T.221, D.248, G.268, G.270
6 PLIP interactions:5 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.217, B:T.221, B:D.248, B:G.268, B:G.270, H2O.14
CA.9: 5 residues within 4Å:- Chain C: D.217, T.221, D.248, G.268, G.270
6 PLIP interactions:5 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.217, C:T.221, C:D.248, C:G.268, C:G.270, H2O.27
CA.10: 5 residues within 4Å:- Chain A: E.92
- Chain B: E.92
- Chain C: E.92
- Chain D: E.92
- Ligands: CA.3
5 PLIP interactions:1 interactions with chain B, 1 interactions with chain D, 1 interactions with chain A, 1 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: B:E.92, D:E.92, A:E.92, C:E.92, H2O.33
CA.13: 5 residues within 4Å:- Chain D: D.217, T.221, D.248, G.268, G.270
6 PLIP interactions:5 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.217, D:T.221, D:D.248, D:G.268, D:G.270, H2O.34
- 4 x DAN: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID(Non-covalent)
DAN.4: 17 residues within 4Å:- Chain A: R.40, E.41, D.73, R.74, R.78, W.101, S.102, I.145, R.147, E.150, A.169, E.199, E.200, R.216, N.218, R.298, Y.333
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:W.101, A:I.145, A:R.147
- Hydrogen bonds: A:R.74, A:R.147, A:R.147, A:E.199, A:E.199, A:R.216, A:R.216
- Water bridges: A:R.40, A:E.41, A:R.74, A:E.150, A:E.150
- Salt bridges: A:R.40, A:R.216, A:R.298
DAN.7: 17 residues within 4Å:- Chain B: R.40, E.41, D.73, R.74, R.78, W.101, S.102, I.145, R.147, E.150, A.169, E.199, E.200, R.216, N.218, R.298, Y.333
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:W.101, B:R.147
- Hydrogen bonds: B:R.74, B:R.147, B:R.147, B:E.199, B:E.199, B:R.216, B:R.216
- Water bridges: B:R.40, B:E.41, B:R.74, B:W.101, B:E.150, B:E.200
- Salt bridges: B:R.40, B:R.216, B:R.298
DAN.11: 17 residues within 4Å:- Chain C: R.40, E.41, D.73, R.74, R.78, W.101, S.102, I.145, R.147, E.150, A.169, E.199, E.200, R.216, N.218, R.298, Y.333
21 PLIP interactions:21 interactions with chain C- Hydrophobic interactions: C:W.101, C:I.145, C:R.147
- Hydrogen bonds: C:R.74, C:R.147, C:R.147, C:E.199, C:E.199, C:R.216, C:R.216
- Water bridges: C:R.40, C:E.41, C:D.73, C:R.74, C:E.150, C:E.150, C:E.150, C:E.200
- Salt bridges: C:R.40, C:R.216, C:R.298
DAN.14: 17 residues within 4Å:- Chain D: R.40, E.41, D.73, R.74, R.78, W.101, S.102, I.145, R.147, E.150, A.169, E.199, E.200, R.216, N.218, R.298, Y.333
18 PLIP interactions:18 interactions with chain D- Hydrophobic interactions: D:W.101, D:R.147
- Hydrogen bonds: D:D.73, D:R.74, D:R.147, D:R.147, D:E.199, D:E.199, D:R.216, D:R.216
- Water bridges: D:R.40, D:E.41, D:R.74, D:W.101, D:E.150
- Salt bridges: D:R.40, D:R.216, D:R.298
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Burmeister, W.P. et al., Influenza B virus neuraminidase can synthesize its own inhibitor. Structure (1993)
- Release Date
- 1993-10-31
- Peptides
- NEURAMINIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x CA: CALCIUM ION(Non-covalent)
- 4 x DAN: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Burmeister, W.P. et al., Influenza B virus neuraminidase can synthesize its own inhibitor. Structure (1993)
- Release Date
- 1993-10-31
- Peptides
- NEURAMINIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B