SMTL ID : 1nup.1

CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC NMN/NaMN ADENYLYLTRANSFERASE COMPLEX WITH NMN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.95, R.98, H.152 6 PLIP interactions: 6 interactions with chain A Water bridges: A:K.95, A:R.98 Salt bridges: A:K.95, A:R.98, A:K.149, A:H.152 SO4.2: 5 residues within 4Å: Chain A: S.14, K.56, A.202, T.203, R.206 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.14, A:T.203 Water bridges: A:S.14, A:A.202, A:A.202, A:T.203, A:R.206 Salt bridges: A:K.56, A:R.206, B:K.140 SO4.4: 4 residues within 4Å: Chain B: K.95, R.98, K.149, H.152 5 PLIP interactions: 5 interactions with chain B Water bridges: B:R.98 Salt bridges: B:K.95, B:R.98, B:K.149, B:H.152 SO4.5: 5 residues within 4Å: Chain B: S.14, K.56, A.202, T.203, R.206 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.14, B:T.203 Water bridges: B:K.56, B:K.56, B:A.202, B:A.202, B:T.203 Salt bridges: B:K.56, B:R.206 SO4.7: 3 residues within 4Å: Chain C: K.95, R.98, H.152 6 PLIP interactions: 6 interactions with chain C Water bridges: C:K.95, C:R.98 Salt bridges: C:K.95, C:R.98, C:K.149, C:H.152 SO4.8: 5 residues within 4Å: Chain C: S.14, K.56, A.202, T.203, R.206 9 PLIP interactions: 8 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:S.14 Water bridges: C:S.14, C:A.202, C:A.202, C:T.203, C:R.206 Salt bridges: C:K.56, C:R.206, D:K.140 SO4.10: 4 residues within 4Å: Chain D: K.95, R.98, K.149, H.152 5 PLIP interactions: 5 interactions with chain D Water bridges: D:R.98 Salt bridges: D:K.95, D:R.98, D:K.149, D:H.152 SO4.11: 5 residues within 4Å: Chain D: S.14, K.56, A.202, T.203, R.206 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:S.14 Water bridges: D:K.56, D:K.56, D:A.202, D:A.202, D:T.203 Salt bridges: D:K.56, D:R.206

4 x NMN: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE(Non-covalent)

NMN.3: 9 residues within 4Å: Chain A: C.12, G.13, V.49, Y.53, W.90, E.92, T.93, L.147, W.148 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.90, A:L.147, A:L.147 Hydrogen bonds: A:C.12, A:Y.53, A:W.90, A:T.93, A:L.147 Water bridges: A:G.13, A:V.94, A:K.149 pi-Stacking: A:W.148 NMN.6: 10 residues within 4Å: Chain B: C.12, G.13, S.14, V.49, Y.53, W.90, E.92, T.93, L.147, W.148 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:W.90, B:L.147 Hydrogen bonds: B:C.12, B:S.14, B:Y.53, B:T.93, B:T.93, B:L.147 Water bridges: B:G.13, B:V.94, B:K.149 pi-Stacking: B:W.148 NMN.9: 9 residues within 4Å: Chain C: C.12, G.13, V.49, Y.53, W.90, E.92, T.93, L.147, W.148 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:W.90, C:L.147, C:L.147 Hydrogen bonds: C:C.12, C:W.90, C:T.93, C:T.93, C:L.147 Water bridges: C:G.13, C:V.94, C:K.149, C:H.152, C:H.152 pi-Stacking: C:W.148 NMN.12: 10 residues within 4Å: Chain D: C.12, G.13, S.14, V.49, Y.53, W.90, E.92, T.93, L.147, W.148 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:W.90, D:L.147 Hydrogen bonds: D:C.12, D:S.14, D:T.93, D:T.93, D:L.147 Water bridges: D:G.13, D:V.94, D:K.149, D:H.152 pi-Stacking: D:W.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

ZHANG, X. et al., STRUCTURAL CHARACTERIZATION OF A HUMAN CYTOSOLIC NMN/NaMN ADENYLYLTRANSFERASE AND IMPLICATION IN HUMAN NAD BIOSYNTHESIS. J.Biol.Chem. (2003)

Release Date

2003-06-03

Peptides

FKSG76: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

FKSG76

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