SMTL ID : 1nvt.1

Crystal structure of Shikimate Dehydrogenase (AROE or MJ1084) in complex with NADP+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 1 residues within 4Å: Chain A: H.19 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.19 ZN.3: 2 residues within 4Å: Chain B: E.22, H.23 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.22, B:E.22, B:H.23

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 21 residues within 4Å: Chain A: G.135, A.136, G.137, G.138, A.139, N.157, R.158, T.159, K.162, L.187, A.200, T.201, P.202, I.203, M.205, L.229, I.230, Y.231, G.252, M.255, L.256 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:Y.231 Hydrogen bonds: A:A.136, A:G.137, A:G.138, A:A.139, A:N.157, A:R.158, A:T.159, A:T.159, A:T.201, A:G.252, A:L.256 Water bridges: A:G.138, A:A.140, A:R.158, A:R.158 Salt bridges: A:R.158, A:K.162 pi-Cation interactions: A:R.158, A:R.158 NAP.4: 24 residues within 4Å: Chain B: I.72, K.75, D.111, G.135, A.136, G.137, G.138, A.139, N.157, R.158, T.159, K.162, L.187, A.200, T.201, P.202, I.203, M.205, L.229, I.230, Y.231, G.252, M.255, L.256 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:A.136, B:G.137, B:G.138, B:A.139, B:N.157, B:R.158, B:T.159, B:T.201, B:G.252, B:L.256 Salt bridges: B:R.158, B:K.162 pi-Cation interactions: B:R.158, B:R.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Padyana, A.K. et al., Crystal structure of shikimate 5-dehydrogenase (SDH) bound to NADP: insights into function and evolution. Structure (2003)

Release Date

2003-03-25

Peptides

Shikimate 5'-dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Shikimate 5'-dehydrogenase