SMTL ID : 1nxj.1 (2 other biounits)

Structure of Rv3853 from Mycobacterium tuberculosis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

3 x GLV: GLYOXYLIC ACID(Non-covalent)

GLV.1: 7 residues within 4Å: Chain A: L.50, Q.51, F.52, K.139, D.177 Chain C: R.53, T.143 8 PLIP interactions: 2 interactions with chain C, 6 interactions with chain A Hydrogen bonds: C:R.53, C:R.53, A:F.52, A:D.177 Water bridges: A:Q.51, A:K.139, A:I.180 Salt bridges: A:K.139 GLV.3: 7 residues within 4Å: Chain A: R.53, T.143 Chain B: L.50, Q.51, F.52, K.139, D.177 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:F.52, B:D.177, A:R.53, A:R.53 Water bridges: B:Q.51, B:K.139, B:I.180 Salt bridges: B:K.139 GLV.5: 7 residues within 4Å: Chain B: R.53, T.143 Chain C: L.50, Q.51, F.52, K.139, D.177 8 PLIP interactions: 6 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:F.52, C:D.177, B:R.53, B:R.53 Water bridges: C:Q.51, C:K.139, C:I.180 Salt bridges: C:K.139

3 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.2: 12 residues within 4Å: Chain A: N.74, A.101, V.103, G.104, D.105, V.106, I.107, R.126, D.127, K.147, S.148, K.150 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.74, A:A.101, A:G.104, A:D.105, A:V.106, A:I.107, A:D.127, A:S.148 Water bridges: A:D.105, A:R.126 Salt bridges: A:R.126, A:K.150 TLA.4: 12 residues within 4Å: Chain B: N.74, A.101, V.103, G.104, D.105, V.106, I.107, R.126, D.127, K.147, S.148, K.150 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:N.74, B:A.101, B:G.104, B:D.105, B:V.106, B:I.107, B:D.127, B:S.148 Water bridges: B:D.105, B:R.126 Salt bridges: B:R.126, B:K.150 TLA.6: 12 residues within 4Å: Chain C: N.74, A.101, V.103, G.104, D.105, V.106, I.107, R.126, D.127, K.147, S.148, K.150 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:N.74, C:A.101, C:G.104, C:D.105, C:V.106, C:I.107, C:D.127, C:S.148 Water bridges: C:D.105, C:R.126 Salt bridges: C:R.126, C:K.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnston, J.M. et al., Crystal Structure of a Putative Methyltransferase from Mycobacterium tuberculosis: Misannotation of a Genome Clarified by Protein Structural Analysis. J.Bacteriol. (2003)

Release Date

2003-07-29

Peptides

Probable S-adenosylmethionine:2-demethylmenaquinone methyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Probable S-adenosylmethionine:2-demethylmenaquinone methyltransferase

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