- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.5: 24 residues within 4Å:- Chain A: V.62, P.63, K.65, D.102, G.126, A.127, G.128, G.129, A.130, N.149, R.150, T.151, R.154, A.187, T.188, S.189, S.190, M.213, Y.215, G.237, M.240, L.241, Q.244
- Ligands: DTV.6
31 PLIP interactions:31 interactions with chain A- Hydrophobic interactions: A:A.130
- Hydrogen bonds: A:A.127, A:G.128, A:G.129, A:A.130, A:N.149, A:R.150, A:R.150, A:T.151, A:T.151, A:T.188, A:S.189, A:M.213, A:L.241
- Water bridges: A:S.131, A:R.150, A:R.154, A:R.154, A:R.154, A:R.154, A:S.189, A:S.189, A:D.195, A:D.195, A:D.195, A:D.195, A:I.196
- Salt bridges: A:R.150, A:R.154
- pi-Cation interactions: A:R.150, A:R.150
NAP.11: 21 residues within 4Å:- Chain B: V.62, P.63, K.65, D.102, G.126, A.127, G.128, G.129, A.130, N.149, R.150, T.151, R.154, A.187, T.188, S.189, S.190, M.213, G.237, M.240, L.241
30 PLIP interactions:30 interactions with chain B- Hydrophobic interactions: B:A.130
- Hydrogen bonds: B:A.127, B:G.128, B:G.129, B:A.130, B:N.149, B:R.150, B:R.150, B:T.151, B:T.151, B:T.188, B:S.189, B:M.213
- Water bridges: B:V.62, B:S.131, B:R.150, B:R.154, B:R.154, B:R.154, B:R.154, B:S.189, B:S.193, B:S.193, B:D.195, B:D.195, B:I.196
- Salt bridges: B:R.150, B:R.154
- pi-Cation interactions: B:R.150, B:R.150
NAP.16: 20 residues within 4Å:- Chain C: G.126, A.127, G.128, G.129, A.130, N.149, R.150, T.151, R.154, A.187, T.188, S.189, S.190, M.213, F.214, G.237, M.240, L.241, Q.244
- Ligands: SO4.13
23 PLIP interactions:23 interactions with chain C- Hydrophobic interactions: C:A.130
- Hydrogen bonds: C:A.127, C:G.128, C:G.129, C:A.130, C:N.149, C:R.150, C:R.150, C:T.151, C:T.151, C:T.188, C:S.189, C:M.213, C:L.241, C:Q.244
- Water bridges: C:S.131, C:R.150, C:R.150, C:S.189
- Salt bridges: C:R.150, C:R.154
- pi-Cation interactions: C:R.150, C:R.150
NAP.19: 22 residues within 4Å:- Chain D: V.62, K.65, D.102, G.126, A.127, G.128, G.129, A.130, N.149, R.150, T.151, R.154, A.187, T.188, S.189, S.190, M.213, Y.215, G.237, M.240, L.241
- Ligands: SO4.18
25 PLIP interactions:25 interactions with chain D- Hydrophobic interactions: D:A.130
- Hydrogen bonds: D:A.127, D:G.128, D:G.129, D:A.130, D:N.149, D:R.150, D:R.150, D:T.151, D:T.151, D:T.188, D:S.189, D:M.213, D:L.241
- Water bridges: D:S.131, D:R.150, D:R.154, D:R.154, D:R.154, D:R.154, D:I.196
- Salt bridges: D:R.150, D:R.154
- pi-Cation interactions: D:R.150, D:R.150
- 1 x DTV: (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Michel, G. et al., Structures of shikimate dehydrogenase AroE and its Paralog YdiB. A common structural framework for different activities. J.Biol.Chem. (2003)
- Release Date
- 2003-03-04
- Peptides
- Shikimate 5-dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 1 x DTV: (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Michel, G. et al., Structures of shikimate dehydrogenase AroE and its Paralog YdiB. A common structural framework for different activities. J.Biol.Chem. (2003)
- Release Date
- 2003-03-04
- Peptides
- Shikimate 5-dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D