SMTL ID : 1nyx.1

Ligand binding domain of the human peroxisome proliferator activated receptor gamma in complex with an agonist

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-dimer

Ligands

1 x DRF: (2S)-2-ETHOXY-3-{4-[2-(10H-PHENOXAZIN-10-YL)ETHOXY]PHENYL}PROPANOIC ACID(Non-covalent)

DRF.1: 20 residues within 4Å: Chain A: I.80, F.81, G.83, C.84, Q.85, R.87, S.88, H.122, I.125, Y.126, L.129, L.139, I.140, S.141, M.147, M.163, H.248, L.252, L.268, Y.272 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.80, A:F.81, A:R.87, A:R.87, A:I.125 Hydrogen bonds: A:Y.272 Salt bridges: A:H.122, A:H.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ebdrup, S. et al., Synthesis and biological and structural characterization of the dual-acting peroxisome proliferator-activated receptor alpha/gamma agonist ragaglitazar. J.MED.CHEM. (2003)

Release Date

2003-07-15

Peptides

peroxisome proliferator activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

peroxisome proliferator activated receptor gamma