SMTL ID : 1nza.2 (1 other biounit)

Divalent cation tolerance protein (Cut A1) from thermus thermophilus HB8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-12-mer

Ligands

24 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: T.8, E.52, E.81 Ligands: CL.4 Ligand excluded by PLIP NA.2: 5 residues within 4Å: Chain A: D.50, Q.51 Chain C: D.50, Q.51 Ligands: NA.18 Ligand excluded by PLIP NA.9: 4 residues within 4Å: Chain B: T.8, E.52, E.81 Ligands: CL.12 Ligand excluded by PLIP NA.10: 5 residues within 4Å: Chain B: D.50, Q.51 Chain D: D.50, Q.51 Ligands: NA.26 Ligand excluded by PLIP NA.17: 4 residues within 4Å: Chain C: T.8, E.52, E.81 Ligands: CL.20 Ligand excluded by PLIP NA.18: 5 residues within 4Å: Chain A: D.50, Q.51 Chain C: D.50, Q.51 Ligands: NA.2 Ligand excluded by PLIP NA.25: 4 residues within 4Å: Chain D: T.8, E.52, E.81 Ligands: CL.28 Ligand excluded by PLIP NA.26: 5 residues within 4Å: Chain B: D.50, Q.51 Chain D: D.50, Q.51 Ligands: NA.10 Ligand excluded by PLIP NA.33: 4 residues within 4Å: Chain E: T.8, E.52, E.81 Ligands: CL.36 Ligand excluded by PLIP NA.34: 5 residues within 4Å: Chain E: D.50, Q.51 Chain G: D.50, Q.51 Ligands: NA.50 Ligand excluded by PLIP NA.41: 4 residues within 4Å: Chain F: T.8, E.52, E.81 Ligands: CL.44 Ligand excluded by PLIP NA.42: 5 residues within 4Å: Chain F: D.50, Q.51 Chain H: D.50, Q.51 Ligands: NA.58 Ligand excluded by PLIP NA.49: 4 residues within 4Å: Chain G: T.8, E.52, E.81 Ligands: CL.52 Ligand excluded by PLIP NA.50: 5 residues within 4Å: Chain E: D.50, Q.51 Chain G: D.50, Q.51 Ligands: NA.34 Ligand excluded by PLIP NA.57: 4 residues within 4Å: Chain H: T.8, E.52, E.81 Ligands: CL.60 Ligand excluded by PLIP NA.58: 5 residues within 4Å: Chain F: D.50, Q.51 Chain H: D.50, Q.51 Ligands: NA.42 Ligand excluded by PLIP NA.65: 4 residues within 4Å: Chain I: T.8, E.52, E.81 Ligands: CL.68 Ligand excluded by PLIP NA.66: 5 residues within 4Å: Chain I: D.50, Q.51 Chain K: D.50, Q.51 Ligands: NA.82 Ligand excluded by PLIP NA.73: 4 residues within 4Å: Chain J: T.8, E.52, E.81 Ligands: CL.76 Ligand excluded by PLIP NA.74: 5 residues within 4Å: Chain J: D.50, Q.51 Chain L: D.50, Q.51 Ligands: NA.90 Ligand excluded by PLIP NA.81: 4 residues within 4Å: Chain K: T.8, E.52, E.81 Ligands: CL.84 Ligand excluded by PLIP NA.82: 5 residues within 4Å: Chain I: D.50, Q.51 Chain K: D.50, Q.51 Ligands: NA.66 Ligand excluded by PLIP NA.89: 4 residues within 4Å: Chain L: T.8, E.52, E.81 Ligands: CL.92 Ligand excluded by PLIP NA.90: 5 residues within 4Å: Chain J: D.50, Q.51 Chain L: D.50, Q.51 Ligands: NA.74 Ligand excluded by PLIP

48 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: P.35, G.36, L.53 Ligands: GOL.8 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: T.8, E.52, E.81 Ligands: NA.1 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: Q.51 Chain C: S.11, E.12 Ligands: GOL.8 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: W.43, Q.44 Chain K: W.97 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain B: P.35, G.36, L.53 Ligands: GOL.16 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain B: T.8, E.52, E.81 Ligands: NA.9 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain B: Q.51 Chain D: S.11, E.12 Ligands: GOL.16 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain B: W.43, Q.44 Chain J: W.97 Ligand excluded by PLIP CL.19: 4 residues within 4Å: Chain C: P.35, G.36, L.53 Ligands: GOL.24 Ligand excluded by PLIP CL.20: 4 residues within 4Å: Chain C: T.8, E.52, E.81 Ligands: NA.17 Ligand excluded by PLIP CL.21: 4 residues within 4Å: Chain A: S.11, E.12 Chain C: Q.51 Ligands: GOL.24 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain C: W.43, Q.44 Chain L: W.97 Ligand excluded by PLIP CL.27: 4 residues within 4Å: Chain D: P.35, G.36, L.53 Ligands: GOL.32 Ligand excluded by PLIP CL.28: 4 residues within 4Å: Chain D: T.8, E.52, E.81 Ligands: NA.25 Ligand excluded by PLIP CL.29: 4 residues within 4Å: Chain B: S.11, E.12 Chain D: Q.51 Ligands: GOL.32 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain D: W.43, Q.44 Chain I: W.97 Ligand excluded by PLIP CL.35: 4 residues within 4Å: Chain E: P.35, G.36, L.53 Ligands: GOL.40 Ligand excluded by PLIP CL.36: 4 residues within 4Å: Chain E: T.8, E.52, E.81 Ligands: NA.33 Ligand excluded by PLIP CL.37: 4 residues within 4Å: Chain E: Q.51 Chain G: S.11, E.12 Ligands: GOL.40 Ligand excluded by PLIP CL.38: 3 residues within 4Å: Chain C: W.97 Chain E: W.43, Q.44 Ligand excluded by PLIP CL.43: 4 residues within 4Å: Chain F: P.35, G.36, L.53 Ligands: GOL.48 Ligand excluded by PLIP CL.44: 4 residues within 4Å: Chain F: T.8, E.52, E.81 Ligands: NA.41 Ligand excluded by PLIP CL.45: 4 residues within 4Å: Chain F: Q.51 Chain H: S.11, E.12 Ligands: GOL.48 Ligand excluded by PLIP CL.46: 3 residues within 4Å: Chain B: W.97 Chain F: W.43, Q.44 Ligand excluded by PLIP CL.51: 4 residues within 4Å: Chain G: P.35, G.36, L.53 Ligands: GOL.56 Ligand excluded by PLIP CL.52: 4 residues within 4Å: Chain G: T.8, E.52, E.81 Ligands: NA.49 Ligand excluded by PLIP CL.53: 4 residues within 4Å: Chain E: S.11, E.12 Chain G: Q.51 Ligands: GOL.56 Ligand excluded by PLIP CL.54: 3 residues within 4Å: Chain D: W.97 Chain G: W.43, Q.44 Ligand excluded by PLIP CL.59: 4 residues within 4Å: Chain H: P.35, G.36, L.53 Ligands: GOL.64 Ligand excluded by PLIP CL.60: 4 residues within 4Å: Chain H: T.8, E.52, E.81 Ligands: NA.57 Ligand excluded by PLIP CL.61: 4 residues within 4Å: Chain F: S.11, E.12 Chain H: Q.51 Ligands: GOL.64 Ligand excluded by PLIP CL.62: 3 residues within 4Å: Chain A: W.97 Chain H: W.43, Q.44 Ligand excluded by PLIP CL.67: 4 residues within 4Å: Chain I: P.35, G.36, L.53 Ligands: GOL.72 Ligand excluded by PLIP CL.68: 4 residues within 4Å: Chain I: T.8, E.52, E.81 Ligands: NA.65 Ligand excluded by PLIP CL.69: 4 residues within 4Å: Chain I: Q.51 Chain K: S.11, E.12 Ligands: GOL.72 Ligand excluded by PLIP CL.70: 3 residues within 4Å: Chain G: W.97 Chain I: W.43, Q.44 Ligand excluded by PLIP CL.75: 4 residues within 4Å: Chain J: P.35, G.36, L.53 Ligands: GOL.80 Ligand excluded by PLIP CL.76: 4 residues within 4Å: Chain J: T.8, E.52, E.81 Ligands: NA.73 Ligand excluded by PLIP CL.77: 4 residues within 4Å: Chain J: Q.51 Chain L: S.11, E.12 Ligands: GOL.80 Ligand excluded by PLIP CL.78: 3 residues within 4Å: Chain F: W.97 Chain J: W.43, Q.44 Ligand excluded by PLIP CL.83: 4 residues within 4Å: Chain K: P.35, G.36, L.53 Ligands: GOL.88 Ligand excluded by PLIP CL.84: 4 residues within 4Å: Chain K: T.8, E.52, E.81 Ligands: NA.81 Ligand excluded by PLIP CL.85: 4 residues within 4Å: Chain I: S.11, E.12 Chain K: Q.51 Ligands: GOL.88 Ligand excluded by PLIP CL.86: 3 residues within 4Å: Chain H: W.97 Chain K: W.43, Q.44 Ligand excluded by PLIP CL.91: 4 residues within 4Å: Chain L: P.35, G.36, L.53 Ligands: GOL.96 Ligand excluded by PLIP CL.92: 4 residues within 4Å: Chain L: T.8, E.52, E.81 Ligands: NA.89 Ligand excluded by PLIP CL.93: 4 residues within 4Å: Chain J: S.11, E.12 Chain L: Q.51 Ligands: GOL.96 Ligand excluded by PLIP CL.94: 3 residues within 4Å: Chain E: W.97 Chain L: W.43, Q.44 Ligand excluded by PLIP

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 2 residues within 4Å: Chain A: M.1, E.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.1 Water bridges: A:I.87, A:A.88 SO4.15: 2 residues within 4Å: Chain B: M.1, E.2 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:M.1 Water bridges: B:I.87, B:A.88 SO4.23: 2 residues within 4Å: Chain C: M.1, E.2 2 PLIP interactions: 2 interactions with chain C Water bridges: C:I.87, C:A.88 SO4.31: 2 residues within 4Å: Chain D: M.1, E.2 2 PLIP interactions: 2 interactions with chain D Water bridges: D:I.87, D:A.88 SO4.39: 2 residues within 4Å: Chain E: M.1, E.2 2 PLIP interactions: 2 interactions with chain E Water bridges: E:I.87, E:A.88 SO4.47: 2 residues within 4Å: Chain F: M.1, E.2 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:M.1 Water bridges: F:I.87, F:A.88 SO4.55: 2 residues within 4Å: Chain G: M.1, E.2 2 PLIP interactions: 2 interactions with chain G Water bridges: G:I.87, G:A.88 SO4.63: 2 residues within 4Å: Chain H: M.1, E.2 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:M.1 Water bridges: H:I.87, H:A.88 SO4.71: 2 residues within 4Å: Chain I: M.1, E.2 2 PLIP interactions: 2 interactions with chain I Water bridges: I:I.87, I:A.88 SO4.79: 2 residues within 4Å: Chain J: M.1, E.2 3 PLIP interactions: 3 interactions with chain J Hydrogen bonds: J:M.1 Water bridges: J:I.87, J:A.88 SO4.87: 2 residues within 4Å: Chain K: M.1, E.2 3 PLIP interactions: 3 interactions with chain K Hydrogen bonds: K:M.1 Water bridges: K:I.87, K:A.88 SO4.95: 2 residues within 4Å: Chain L: M.1, E.2 2 PLIP interactions: 2 interactions with chain L Water bridges: L:I.87, L:A.88

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 9 residues within 4Å: Chain A: G.36, L.37, T.38, Q.51, E.52 Chain C: Q.51 Ligands: CL.3, CL.5, GOL.24 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.52 Water bridges: A:G.36, A:T.38 GOL.16: 9 residues within 4Å: Chain B: G.36, L.37, T.38, Q.51, E.52 Chain D: Q.51 Ligands: CL.11, CL.13, GOL.32 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.52 Water bridges: B:G.36, B:T.38 GOL.24: 9 residues within 4Å: Chain A: Q.51 Chain C: G.36, L.37, T.38, Q.51, E.52 Ligands: GOL.8, CL.19, CL.21 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.52 Water bridges: C:G.36 GOL.32: 9 residues within 4Å: Chain B: Q.51 Chain D: G.36, L.37, T.38, Q.51, E.52 Ligands: GOL.16, CL.27, CL.29 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.52 Water bridges: D:G.36 GOL.40: 9 residues within 4Å: Chain E: G.36, L.37, T.38, Q.51, E.52 Chain G: Q.51 Ligands: CL.35, CL.37, GOL.56 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:E.52 Water bridges: E:G.36, E:T.38 GOL.48: 9 residues within 4Å: Chain F: G.36, L.37, T.38, Q.51, E.52 Chain H: Q.51 Ligands: CL.43, CL.45, GOL.64 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:E.52 Water bridges: F:G.36 GOL.56: 9 residues within 4Å: Chain E: Q.51 Chain G: G.36, L.37, T.38, Q.51, E.52 Ligands: GOL.40, CL.51, CL.53 3 PLIP interactions: 3 interactions with chain G Hydrogen bonds: G:E.52 Water bridges: G:G.36, G:T.38 GOL.64: 9 residues within 4Å: Chain F: Q.51 Chain H: G.36, L.37, T.38, Q.51, E.52 Ligands: GOL.48, CL.59, CL.61 2 PLIP interactions: 2 interactions with chain H Hydrogen bonds: H:E.52 Water bridges: H:G.36 GOL.72: 9 residues within 4Å: Chain I: G.36, L.37, T.38, Q.51, E.52 Chain K: Q.51 Ligands: CL.67, CL.69, GOL.88 3 PLIP interactions: 3 interactions with chain I Hydrogen bonds: I:E.52 Water bridges: I:G.36, I:T.38 GOL.80: 9 residues within 4Å: Chain J: G.36, L.37, T.38, Q.51, E.52 Chain L: Q.51 Ligands: CL.75, CL.77, GOL.96 2 PLIP interactions: 2 interactions with chain J Hydrogen bonds: J:E.52 Water bridges: J:G.36 GOL.88: 9 residues within 4Å: Chain I: Q.51 Chain K: G.36, L.37, T.38, Q.51, E.52 Ligands: GOL.72, CL.83, CL.85 2 PLIP interactions: 2 interactions with chain K Hydrogen bonds: K:E.52 Water bridges: K:G.36 GOL.96: 9 residues within 4Å: Chain J: Q.51 Chain L: G.36, L.37, T.38, Q.51, E.52 Ligands: GOL.80, CL.91, CL.93 3 PLIP interactions: 3 interactions with chain L Hydrogen bonds: L:E.52 Water bridges: L:G.36, L:T.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagautdinov, B., The structures of the CutA1 proteins from Thermus thermophilus and Pyrococcus horikoshii: characterization of metal-binding sites and metal-induced assembly. Acta Crystallogr.,Sect.F (2014)

Release Date

2003-03-11

Peptides

Divalent cation tolerance protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

Divalent cation tolerance protein

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