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SMTL ID : 1nzc.1
(1 other biounit)
The high resolution structures of RmlC from Streptococcus suis in complex with dTDP-D-xylose
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.80 Å
Oligo State
homo-dimer
Ligands
2 x
TDX
:
THYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE
(Non-covalent)
TDX.1:
14 residues within 4Å:
Chain A:
Q.61
,
N.63
,
R.73
,
H.76
,
E.78
,
K.82
,
N.127
,
Y.140
,
W.146
,
D.180
Chain B:
H.29
,
R.33
,
F.36
,
E.38
23
PLIP interactions
:
8 interactions with chain B
,
15 interactions with chain A
Hydrophobic interactions:
B:F.36
,
B:F.36
,
A:W.146
,
A:W.146
Hydrogen bonds:
B:H.29
,
B:E.38
,
A:Q.61
,
A:H.76
,
A:E.78
,
A:K.82
,
A:N.127
,
A:Y.140
Water bridges:
B:R.33
,
B:R.33
,
A:K.151
,
A:K.151
Salt bridges:
B:R.33
,
B:R.33
,
A:R.73
,
A:H.76
,
A:H.76
,
A:K.151
pi-Stacking:
A:W.146
TDX.3:
11 residues within 4Å:
Chain A:
R.33
,
F.36
,
E.38
Chain B:
Q.61
,
R.73
,
E.78
,
K.82
,
N.127
,
F.129
,
Y.140
,
W.146
18
PLIP interactions
:
12 interactions with chain B
,
6 interactions with chain A
Hydrophobic interactions:
B:W.146
,
A:F.36
Hydrogen bonds:
B:Q.61
,
B:E.78
,
B:K.82
,
B:N.127
,
B:Y.140
,
A:E.38
,
A:E.38
Water bridges:
B:W.146
,
B:S.177
,
A:R.33
Salt bridges:
B:R.73
,
B:R.73
,
A:R.33
,
A:R.33
pi-Stacking:
B:W.146
,
B:W.146
1 x
NI
:
NICKEL (II) ION
(Non-covalent)
NI.2:
1 residues within 4Å:
Chain B:
E.52
No protein-ligand interaction detected (PLIP)
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Dong, C. et al., High-Resolution Structures of RmlC from Streptococcus suis in Complex with Substrate Analogs Locate the Active Site of This Class of Enzyme. Structure (2003)
Release Date
2003-06-24
Peptides
dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase
Toggle Identical (AB)
Related Entries With Identical Sequence
1nxm.1
|
1nyw.1
|
1nzc.2
|
2ixl.1
|
2ixl.2
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