SMTL ID : 1nzy.1 (1 other biounit)

4-CHLOROBENZOYL COENZYME A DEHALOGENASE FROM PSEUDOMONAS SP. STRAIN CBS-3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-4-2-mer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: G.49, L.202, A.203, A.205, T.207, Q.210 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.49, A:L.202, A:A.203, A:A.205, A:T.207 CA.3: 6 residues within 4Å: Chain B: G.49, L.202, A.203, A.205, T.207, Q.210 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:G.49, B:L.202, B:A.203, B:A.205, B:T.207 CA.8: 6 residues within 4Å: Chain C: G.49, L.202, A.203, A.205, T.207, Q.210 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:G.49, C:L.202, C:A.203, C:A.205, C:T.207 CA.10: 6 residues within 4Å: Chain D: G.49, L.202, A.203, A.205, T.207, Q.210 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:G.49, D:L.202, D:A.203, D:A.205, D:T.207 CA.12: 6 residues within 4Å: Chain E: G.49, L.202, A.203, A.205, T.207, Q.210 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:G.49, E:L.202, E:A.203, E:A.205, E:T.207 CA.17: 6 residues within 4Å: Chain F: G.49, L.202, A.203, A.205, T.207, Q.210 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:G.49, F:L.202, F:A.203, F:A.205, F:T.207

6 x BCA: 4-HYDROXYBENZOYL COENZYME A(Non-covalent)

BCA.2: 21 residues within 4Å: Chain A: R.22, H.23, R.24, A.26, A.62, G.63, F.64, Y.65, L.66, R.67, W.89, H.90, G.113, G.114, A.136, W.137, I.140, D.145, T.146 Chain B: F.252, R.257 17 PLIP interactions: 14 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:A.62, A:F.64, A:W.89, A:T.146 Hydrogen bonds: A:A.62, A:F.64, A:F.64, A:L.66, A:R.67, A:G.114 Water bridges: A:R.24 Salt bridges: A:R.24, A:R.24, B:R.257 pi-Stacking: A:F.64, B:F.252, B:F.252 BCA.5: 21 residues within 4Å: Chain B: R.22, H.23, R.24, A.26, A.62, G.63, F.64, Y.65, L.66, R.67, W.89, G.113, G.114, A.136, W.137, I.140, D.145, T.146 Chain C: F.252, A.258, D.259 16 PLIP interactions: 12 interactions with chain B, 4 interactions with chain C Hydrophobic interactions: B:A.62, B:F.64, B:W.89, B:T.146, C:D.259 Hydrogen bonds: B:A.62, B:F.64, B:F.64, B:L.66, B:R.67, B:G.114, C:D.259 Salt bridges: B:R.24, B:R.24 pi-Stacking: C:F.252, C:F.252 BCA.9: 23 residues within 4Å: Chain A: F.252, R.257, A.258, D.259 Chain C: R.22, H.23, R.24, A.26, A.62, G.63, F.64, Y.65, L.66, R.67, W.89, G.113, G.114, A.136, W.137, I.140, I.142, D.145, T.146 22 PLIP interactions: 14 interactions with chain C, 8 interactions with chain A Hydrophobic interactions: C:F.64, C:W.89, C:W.89, C:I.142, C:T.146, A:D.259 Hydrogen bonds: C:A.62, C:F.64, C:F.64, C:L.66, C:R.67, C:G.114, A:A.258, A:D.259 Salt bridges: C:R.24, C:R.24, A:R.257, A:R.257 pi-Stacking: C:F.64, A:F.252, A:F.252 Water bridges: A:R.257 BCA.11: 21 residues within 4Å: Chain D: R.22, H.23, R.24, A.26, A.62, G.63, F.64, Y.65, L.66, R.67, W.89, H.90, G.113, G.114, A.136, W.137, I.140, D.145, T.146 Chain E: F.252, R.257 17 PLIP interactions: 14 interactions with chain D, 3 interactions with chain E Hydrophobic interactions: D:A.62, D:F.64, D:W.89, D:T.146 Hydrogen bonds: D:A.62, D:F.64, D:F.64, D:L.66, D:R.67, D:G.114 Water bridges: D:R.24 Salt bridges: D:R.24, D:R.24, E:R.257 pi-Stacking: D:F.64, E:F.252, E:F.252 BCA.14: 21 residues within 4Å: Chain E: R.22, H.23, R.24, A.26, A.62, G.63, F.64, Y.65, L.66, R.67, W.89, G.113, G.114, A.136, W.137, I.140, D.145, T.146 Chain F: F.252, A.258, D.259 16 PLIP interactions: 12 interactions with chain E, 4 interactions with chain F Hydrophobic interactions: E:A.62, E:F.64, E:W.89, E:T.146, F:D.259 Hydrogen bonds: E:A.62, E:F.64, E:F.64, E:L.66, E:R.67, E:G.114, F:D.259 Salt bridges: E:R.24, E:R.24 pi-Stacking: F:F.252, F:F.252 BCA.18: 23 residues within 4Å: Chain D: F.252, R.257, A.258, D.259 Chain F: R.22, H.23, R.24, A.26, A.62, G.63, F.64, Y.65, L.66, R.67, W.89, G.113, G.114, A.136, W.137, I.140, I.142, D.145, T.146 22 PLIP interactions: 8 interactions with chain D, 14 interactions with chain F Hydrophobic interactions: D:D.259, F:F.64, F:W.89, F:W.89, F:I.142, F:T.146 Hydrogen bonds: D:A.258, D:D.259, F:A.62, F:F.64, F:F.64, F:L.66, F:R.67, F:G.114 Water bridges: D:R.257 Salt bridges: D:R.257, D:R.257, F:R.24, F:R.24 pi-Stacking: D:F.252, D:F.252, F:F.64

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 8 residues within 4Å: Chain B: E.57, D.58, N.108, A.128, S.130, K.188, F.191, R.192 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:N.108, B:N.108, B:N.108, B:S.130 Water bridges: B:K.188, B:R.192, B:R.192, B:R.192 Salt bridges: B:K.188, B:R.192 PO4.13: 8 residues within 4Å: Chain E: E.57, D.58, N.108, A.128, S.130, K.188, F.191, R.192 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:N.108, E:N.108, E:N.108, E:S.130 Water bridges: E:K.188, E:R.192, E:R.192, E:R.192 Salt bridges: E:K.188, E:R.192

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 2 residues within 4Å: Chain B: R.251, H.256 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.251, B:R.251, B:H.256 EDO.7: 4 residues within 4Å: Chain B: Y.2, E.3, I.5, K.19 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.2, B:K.19 Water bridges: B:H.7 EDO.15: 2 residues within 4Å: Chain E: R.251, H.256 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:R.251, E:R.251, E:H.256 EDO.16: 4 residues within 4Å: Chain E: Y.2, E.3, I.5, K.19 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:Y.2, E:K.19 Water bridges: E:H.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benning, M.M. et al., Structure of 4-chlorobenzoyl coenzyme A dehalogenase determined to 1.8 A resolution: an enzyme catalyst generated via adaptive mutation. Biochemistry (1996)

Release Date

1997-07-07

Peptides

4-CHLOROBENZOYL COENZYME A DEHALOGENASE: ACDF
4-CHLOROBENZOYL COENZYME A DEHALOGENASE: BE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

D
A

F
C

B
B

E
B

4-CHLOROBENZOYL COENZYME A DEHALOGENASE

4-CHLOROBENZOYL COENZYME A DEHALOGENASE

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