SMTL ID : 1o1i.1

Cyanomet hemoglobin (A-GLY-C:V1M,L29F,H58Q; B,D:V1M,L106W)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-2-mer

Ligands

4 x CYN: CYANIDE ION(Non-covalent)

CYN.1: 4 residues within 4Å: Chain A: F.29, Q.58, V.62 Ligands: HEM.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.58 CYN.3: 4 residues within 4Å: Chain B: F.42, H.63, V.67 Ligands: HEM.4 No protein-ligand interaction detected (PLIP) CYN.5: 4 residues within 4Å: Chain C: F.29, Q.58, V.62 Ligands: HEM.6 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.58 CYN.7: 4 residues within 4Å: Chain D: F.42, H.63, V.67 Ligands: HEM.8 No protein-ligand interaction detected (PLIP)

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 16 residues within 4Å: Chain A: Y.42, F.43, H.45, F.46, Q.58, K.61, L.83, L.86, H.87, L.91, N.97, F.98, L.101, V.132, L.136 Ligands: CYN.1 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:Y.42, A:Y.42, A:F.43, A:F.43, A:L.83, A:L.86, A:L.91, A:F.98, A:V.132, A:L.136 Water bridges: A:Q.58 Salt bridges: A:H.45, A:K.61 Metal complexes: A:H.87 HEM.4: 18 residues within 4Å: Chain B: T.38, F.41, F.42, F.45, H.63, V.67, A.70, L.88, L.91, H.92, L.96, V.98, N.102, F.103, W.106, V.137, L.141 Ligands: CYN.3 18 PLIP interactions: 18 interactions with chain B, Hydrophobic interactions: B:T.38, B:F.41, B:F.41, B:F.42, B:F.42, B:V.67, B:A.70, B:L.88, B:L.91, B:L.96, B:V.98, B:F.103, B:W.106, B:W.106, B:V.137, B:L.141 Salt bridges: B:H.63 Metal complexes: B:H.92 HEM.6: 16 residues within 4Å: Chain C: Y.42, F.43, H.45, F.46, Q.58, K.61, L.83, L.86, H.87, L.91, N.97, F.98, L.101, V.132, L.136 Ligands: CYN.5 14 PLIP interactions: 14 interactions with chain C, Hydrophobic interactions: C:Y.42, C:Y.42, C:F.43, C:F.43, C:L.83, C:L.86, C:L.91, C:F.98, C:V.132, C:L.136 Water bridges: C:Q.58 Salt bridges: C:H.45, C:K.61 Metal complexes: C:H.87 HEM.8: 18 residues within 4Å: Chain D: T.38, F.41, F.42, F.45, H.63, V.67, A.70, L.88, L.91, H.92, L.96, V.98, N.102, F.103, W.106, V.137, L.141 Ligands: CYN.7 18 PLIP interactions: 18 interactions with chain D, Hydrophobic interactions: D:T.38, D:F.41, D:F.41, D:F.42, D:F.42, D:V.67, D:A.70, D:L.88, D:L.91, D:L.96, D:V.98, D:F.103, D:W.106, D:W.106, D:V.137, D:L.141 Salt bridges: D:H.63 Metal complexes: D:H.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

 - 

Release Date

2002-12-18

Peptides

Hemoglobin Alpha chain: AC
Hemoglobin Beta chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Hemoglobin Alpha chain

Hemoglobin Beta chain

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