SMTL ID : 1o4y.1

THE THREE-DIMENSIONAL STRUCTURE OF BETA-AGARASE A FROM ZOBELLIA GALACTANIVORANS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: G.144, T.145 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.145, A:T.145

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.6, S.31, N.33, S.75, D.263 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.6, A:S.75, A:D.263, A:D.263, H2O.8

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: A.14, N.15, Y.192, E.200, Y.202, K.207 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.15, A:Y.202 Water bridges: A:N.15, A:N.15, A:K.194 Salt bridges: A:K.207 SO4.4: 4 residues within 4Å: Chain A: N.33, Y.34, T.35, G.74 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.35, A:T.35 Water bridges: A:T.35, A:T.35, A:T.35 SO4.5: 3 residues within 4Å: Chain A: Q.101, Y.102, N.228 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.101, A:N.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Allouch, J. et al., The Three-dimensional Structures of Two {beta}-Agarases. J.Biol.Chem. (2003)

Release Date

2003-12-09

Peptides

beta-agarase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

beta-agarase A