SMTL ID : 1o62.1

Crystal structure of the apo form of a PLP-dependent enzyme

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: H.61, Y.91, L.92, Y.224, Y.226 Chain B: Y.91 Ligands: ACT.6 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.61, A:R.65 ACT.5: 4 residues within 4Å: Chain B: R.65, V.66, K.204, Y.208 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:Y.208 Water bridges: B:R.65, B:R.65, B:R.65, B:G.68, B:K.70, B:Y.208 Salt bridges: B:K.70, B:K.204 ACT.6: 7 residues within 4Å: Chain A: Y.91 Chain B: H.61, Y.91, L.92, Y.224, Y.226 Ligands: ACT.1 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.91 Hydrogen bonds: B:Y.224, B:Y.226 Salt bridges: B:H.61

6 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 3 residues within 4Å: Chain A: C.90, V.340, F.341 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.340 BME.3: 4 residues within 4Å: Chain A: I.74, C.119, E.120, K.121 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.120, A:K.121 BME.4: 4 residues within 4Å: Chain A: L.282, E.327, C.361, L.362 No protein-ligand interaction detected (PLIP) BME.7: 3 residues within 4Å: Chain B: C.90, V.340, F.341 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.340 BME.8: 3 residues within 4Å: Chain B: C.297, Q.298, K.299 No protein-ligand interaction detected (PLIP) BME.9: 4 residues within 4Å: Chain B: R.329, C.361, L.362, P.363 1 PLIP interactions: 1 interactions with chain B Water bridges: B:L.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Badger, J. et al., Structural analysis of a set of proteins resulting from a bacterial genomics project. Proteins (2005)

Release Date

2003-11-11

Peptides

aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

aminotransferase

Related Entries With Identical Sequence