SMTL ID : 1o6e.1

Epstein-Barr virus protease

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x ISP: PHOSPHORYLISOPROPANE(Covalent)

ISP.1: 10 residues within 4Å: Chain A: L.25, H.48, L.115, S.116, L.117, G.146, R.147, R.148 Chain C: D.123, I.124 6 PLIP interactions: 1 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:I.124, A:L.25, A:R.147 Hydrogen bonds: A:R.147 Water bridges: A:R.148 Salt bridges: A:H.48 ISP.2: 8 residues within 4Å: Chain B: H.48, S.116, L.117, A.118, C.143, G.146, R.147, R.148 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:A.118 Hydrogen bonds: B:R.147, B:R.148, B:R.148 Water bridges: B:L.117 Salt bridges: B:H.48 ISP.3: 10 residues within 4Å: Chain A: D.123, I.124 Chain C: L.25, H.48, L.115, S.116, L.117, G.146, R.147, R.148 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:L.25, C:R.147, A:I.124 Hydrogen bonds: C:R.147 Water bridges: C:R.148 Salt bridges: C:H.48 ISP.4: 8 residues within 4Å: Chain D: H.48, S.116, L.117, A.118, C.143, G.146, R.147, R.148 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:A.118 Hydrogen bonds: D:R.147, D:R.148, D:R.148 Water bridges: D:L.117 Salt bridges: D:H.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buisson, M. et al., The Crystal Structure of the Epstein-Barr Virus Protease Shows Rearrangement of the Processed C Terminus. J.Mol.Biol. (2002)

Release Date

2002-11-14

Peptides

CAPSID PROTEIN P40: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

CAPSID PROTEIN P40