SMTL ID : 1o6f.1

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, D641A MUTANT WITH BOUND PEPTIDE LIGAND SUC-GLY-PRO

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x GLY: GLYCINE(Non-covalent)

GLY.1: 4 residues within 4Å: Chain A: W.595, R.643 Ligands: PRO.2, SIN.3 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Ligand interactions Hydrogen bonds: A:R.643, P.2

1 x PRO: PROLINE(Non-covalent)

PRO.2: 10 residues within 4Å: Chain A: Y.473, F.476, S.554, N.555, W.595, Y.599, V.644, H.680 Ligands: GLY.1, SIN.3 9 PLIP interactions: 1 Ligand-Ligand interactions, 8 interactions with chain A Hydrogen bonds: G.1, A:Y.473, A:S.554, A:N.555 Hydrophobic interactions: A:F.476, A:W.595, A:W.595, A:V.644 Salt bridges: A:H.680

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.3: 7 residues within 4Å: Chain A: F.173, I.591, A.594, W.595, R.643 Ligands: GLY.1, PRO.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.173, A:I.591

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: A.226, E.227, F.228, W.262, I.276, W.279, K.281 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.227, A:E.227, A:K.281, A:K.281 GOL.5: 10 residues within 4Å: Chain A: P.568, D.569, F.571, G.572, D.627, I.628, Q.629, Y.630, P.631, N.668 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.572, A:D.627, A:Q.629, A:N.668 GOL.6: 3 residues within 4Å: Chain A: E.239, D.291, Y.292 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szeltner, Z. et al., Substrate-dependent competency of the catalytic triad of prolyl oligopeptidase. J. Biol. Chem. (2002)

Release Date

2002-11-18

Peptides

Prolyl endopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prolyl endopeptidase