SMTL ID : 1o6z.1

1.95 A resolution structure of (R207S,R292S) mutant of malate dehydrogenase from the halophilic archaeon Haloarcula marismortui (holo form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-tetramer

Ligands

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: K.185, W.278, D.279 Chain D: T.191, D.192 Ligand excluded by PLIP CL.2: 5 residues within 4Å: Chain A: R.146, R.227, H.231 Chain B: Y.54, D.55 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain B: K.185, W.278, D.279 Chain C: T.191, D.192 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: Y.54, D.55 Chain B: R.146, R.227, H.231 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain B: T.191, D.192 Chain C: K.185, W.278, D.279 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain C: R.146, R.227, H.231 Chain D: Y.54, D.55 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain A: T.191, D.192 Chain D: K.185, D.279 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain C: Y.54, D.55 Chain D: R.146, R.227, H.231 Ligand excluded by PLIP

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.3: 24 residues within 4Å: Chain A: V.6, G.7, A.9, G.10, T.11, V.12, D.33, I.34, K.37, Y.65, T.77, A.78, G.79, I.98, I.102, T.118, S.119, N.120, V.122, F.143, G.144, L.147, H.175, T.221 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.147, A:T.221 Hydrogen bonds: A:T.11, A:T.11, A:V.12, A:I.34, A:K.37, A:K.37, A:Y.65, A:G.79, A:T.118, A:N.120, A:N.120 Water bridges: A:A.9, A:G.10, A:G.13, A:K.37 NAD.6: 24 residues within 4Å: Chain B: V.6, G.7, A.9, G.10, T.11, V.12, D.33, I.34, K.37, Y.65, T.77, A.78, G.79, I.102, T.118, S.119, N.120, V.122, F.143, G.144, L.147, H.175, T.221, P.225 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:V.12, B:L.147, B:T.221, B:P.225 Hydrogen bonds: B:T.11, B:V.12, B:K.37, B:K.37, B:A.78, B:G.79, B:T.118, B:T.118, B:N.120 Water bridges: B:A.9, B:G.13, B:K.37 NAD.9: 22 residues within 4Å: Chain C: G.7, A.9, G.10, T.11, V.12, D.33, I.34, K.37, T.77, A.78, G.79, I.98, I.102, T.118, S.119, N.120, V.122, F.143, G.144, L.147, H.175, T.221 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:V.12, C:T.221 Hydrogen bonds: C:T.11, C:V.12, C:K.37, C:K.37, C:G.79, C:T.118, C:T.118, C:N.120 Water bridges: C:G.13, C:N.120 NAD.12: 23 residues within 4Å: Chain D: V.6, G.7, A.9, G.10, T.11, V.12, D.33, I.34, K.37, Y.65, T.77, A.78, G.79, I.98, T.118, S.119, N.120, V.122, F.143, G.144, L.147, H.175, T.221 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:V.12, D:T.221 Hydrogen bonds: D:G.7, D:T.11, D:T.11, D:V.12, D:G.13, D:I.34, D:K.37, D:K.37, D:Y.65, D:A.78, D:G.79, D:T.118, D:N.120, D:N.120 Water bridges: D:A.9, D:G.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Irimia, A. et al., The Oligomeric States of Haloarcula Marismortui Malate Dehydrogenase are Modulated by Solvent Components as Shown by Crystallographic and Biochemical Studies. J.Mol.Biol. (2003)

Release Date

2003-02-06

Peptides

MALATE DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

MALATE DEHYDROGENASE