SMTL ID : 1o75.1

Tp47, the 47-Kilodalton Lipoprotein of Treponema pallidum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

1 x PDX- PDX: 2,3-di-O-sulfo-alpha-D-glucopyranose-(1-6)-2,3-di-O-sulfo-alpha-D-glucopyranose(Non-covalent)

PDX-PDX.1: 13 residues within 4Å: Chain A: Y.221, K.287, G.289, R.290, V.291, R.293 Chain B: R.88, M.234, K.287, G.289, R.290, V.291, R.293 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.88, B:G.289, B:G.289, B:R.290, B:V.291, A:R.293 Water bridges: B:R.293 Salt bridges: B:R.88, B:R.293

5 x XE: XENON(Non-covalent)

XE.2: 3 residues within 4Å: Chain A: Y.260, C.296, F.331 No protein-ligand interaction detected (PLIP) XE.3: 5 residues within 4Å: Chain A: E.72, L.74, M.104, N.149, K.151 No protein-ligand interaction detected (PLIP) XE.4: 4 residues within 4Å: Chain B: Y.260, C.296, G.297, F.331 No protein-ligand interaction detected (PLIP) XE.5: 4 residues within 4Å: Chain B: E.72, L.74, M.104, K.151 No protein-ligand interaction detected (PLIP) XE.6: 2 residues within 4Å: Chain B: K.81, W.93 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deka, R.K. et al., Crystal structure of the 47-kDa lipoprotein of Treponema pallidum reveals a novel penicillin-binding protein. J. Biol. Chem. (2002)

Release Date

2002-11-01

Peptides

47 KDA MEMBRANE ANTIGEN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

47 KDA MEMBRANE ANTIGEN