SMTL ID : 1o87.2 (1 other biounit)

A new MgGDP complex of the Ffh NG domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 4 residues within 4Å: Chain A: Y.79, E.285, G.289, M.294 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.289 FMT.2: 3 residues within 4Å: Chain A: E.280, P.281, R.286 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.286 FMT.3: 3 residues within 4Å: Chain A: R.191, L.192, Q.193 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.192, A:Q.193, A:Q.193

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.4: 16 residues within 4Å: Chain A: L.106, Q.107, G.108, S.109, G.110, K.111, T.112, T.113, K.117, K.246, D.248, G.271, V.272, S.273, E.274 Ligands: MG.5 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:L.106, A:G.108, A:S.109, A:G.110, A:K.111, A:T.112, A:T.113, A:T.113, A:K.117, A:K.246, A:S.273 Water bridges: A:T.112, A:T.113, A:E.274 Salt bridges: A:K.111, A:D.248, A:E.274

2 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 3 residues within 4Å: Chain A: T.112, D.187 Ligands: GDP.4 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.112, H2O.3, H2O.4, H2O.6 MG.6: 1 residues within 4Å: Chain A: D.212 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.212, H2O.5, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Focia, P.J. et al., Novel Protein and Mg2+ Configurations in the Mg2+Gdp Complex of the Srp Gtpase Ffh. Proteins: Struct.,Funct., Genet. (2004)

Release Date

2004-01-02

Peptides

SIGNAL RECOGNITION PARTICLE PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

SIGNAL RECOGNITION PARTICLE PROTEIN

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