SMTL ID : 1o8c.1 (1 other biounit)

CRYSTAL STRUCTURE OF E. COLI K-12 YHDH WITH BOUND NADPH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 28 residues within 4Å: Chain A: N.61, Y.62, T.147, T.151, G.175, S.177, G.178, G.179, V.180, S.199, G.200, R.201, R.219, T.239, V.240, C.261, G.262, L.263, A.264, G.265, D.287, S.288, V.289, I.331, N.334, I.336 Chain B: I.277, L.278 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:T.147, A:T.151 Hydrogen bonds: A:Y.62, A:A.176, A:S.177, A:S.177, A:S.177, A:G.179, A:V.180, A:G.200, A:T.239, A:L.263, A:D.287, A:D.287, A:S.288, A:V.289, A:N.334 Water bridges: A:L.60, A:G.181, A:R.219, A:R.219, A:T.239 Salt bridges: A:R.201, A:R.219 pi-Cation interactions: A:R.219 NDP.2: 30 residues within 4Å: Chain A: I.277, L.278 Chain B: N.61, Y.62, T.147, A.148, T.151, G.175, S.177, G.178, G.179, V.180, S.199, G.200, R.201, R.219, T.239, V.240, C.261, G.262, L.263, A.264, G.265, V.286, D.287, S.288, V.289, I.331, N.334, I.336 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:T.147, B:T.151 Hydrogen bonds: B:Y.62, B:S.177, B:S.177, B:S.177, B:G.179, B:V.180, B:G.200, B:T.239, B:L.263, B:D.287, B:D.287, B:S.288, B:V.289, B:N.334 Water bridges: B:L.60, B:K.63, B:K.63, B:G.181, B:R.219, B:R.219, B:T.239 Salt bridges: B:R.201, B:R.219 pi-Cation interactions: B:R.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sulzenbacher, G. et al., Structure of Escherichia Coli Yhdh, a Putative Quinone Oxidoreductase. Acta Crystallogr.,Sect.D (2004)

Release Date

2004-05-21

Peptides

YHDH: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

YHDH

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