SMTL ID : 1o91.1

Crystal Structure of a Collagen VIII NC1 Domain Trimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

1 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)

CPS.1: 6 residues within 4Å: Chain B: Y.165 Chain C: W.109, Y.123, S.154, Q.156, A.157 9 PLIP interactions: 7 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:W.109, C:W.109, C:W.109, C:Y.123, C:A.157, B:Y.165, B:Y.165 Hydrogen bonds: C:Q.156 Water bridges: C:Y.123

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 12 residues within 4Å: Chain A: Y.96, A.98, H.100, S.137 Chain B: Y.96, A.98, H.100, S.137 Chain C: Y.96, A.98, H.100, S.137 7 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: C:Y.96, C:S.137, C:S.137, A:S.137, B:S.137 Salt bridges: C:H.100, B:H.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kvansakul, M. et al., Crystal Structure of the Collagen Alpha1(Viii) Nc1 Trimer. Matrix Biol. (2003)

Release Date

2003-11-20

Peptides

COLLAGEN ALPHA 1(VIII) CHAIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

COLLAGEN ALPHA 1(VIII) CHAIN