SMTL ID : 1o98.1

1.4A CRYSTAL STRUCTURE OF PHOSPHOGLYCERATE MUTASE FROM BACILLUS STEAROTHERMOPHILUS COMPLEXED WITH 2-PHOSPHOGLYCERATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: D.403, H.407, H.445, N.447, H.462 Ligands: 2PG.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.403, A:D.403, A:H.407, A:H.462, 2PG.3 MN.2: 6 residues within 4Å: Chain A: D.12, S.62, K.336, D.444, H.445 Ligands: 2PG.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.12, A:D.12, A:S.62, A:D.444, A:H.445

1 x 2PG: 2-PHOSPHOGLYCERIC ACID(Non-covalent)

2PG.3: 17 residues within 4Å: Chain A: N.61, S.62, V.122, H.123, R.153, D.154, R.185, R.191, R.261, R.264, K.336, D.403, H.407, H.445, H.462 Ligands: MN.1, MN.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:S.62, A:D.154, A:R.185, A:R.185 Water bridges: A:R.191, A:R.191 Salt bridges: A:H.123, A:R.153, A:R.185, A:R.191, A:R.191, A:R.261, A:R.261, A:R.264, A:K.336, A:H.407, A:H.445, A:H.462

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: H.297, S.299, E.300, F.342, E.349 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.298, A:E.300, A:E.300, A:E.300 Salt bridges: A:H.297 SO4.5: 3 residues within 4Å: Chain A: R.194, D.196, R.197 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.196 Water bridges: A:R.194, A:D.196, A:R.197 Salt bridges: A:R.194, A:R.197 SO4.6: 2 residues within 4Å: Chain A: R.17, E.19 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.17, A:E.19, A:E.19, A:E.450, A:N.465 Salt bridges: A:R.17 SO4.7: 3 residues within 4Å: Chain A: Y.337, E.351, R.357 4 PLIP interactions: 4 interactions with chain A Water bridges: A:Y.337, A:E.349, A:E.349 Salt bridges: A:R.357 SO4.8: 3 residues within 4Å: Chain A: R.134, K.170, Y.174 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.174, A:Y.174 Salt bridges: A:R.134, A:K.170 SO4.9: 5 residues within 4Å: Chain A: R.203, Y.207, R.282, G.283, P.284 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.203, A:D.281 Salt bridges: A:R.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rigden, D.J. et al., Insights Into the Catalytic Mechanism of Cofactor-Independent Phosphoglycerate Mutase from X-Ray Crystallography, Simulated Dynamics and Molecular Modeling. J.Mol.Biol. (2003)

Release Date

2003-05-01

Peptides

2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE

Related Entries With Identical Sequence