SMTL ID : 1o9b.2 (1 other biounit)

QUINATE/SHIKIMATE DEHYDROGENASE YDIB COMPLEXED WITH NADH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 23 residues within 4Å: Chain A: D.107, G.131, A.132, G.133, G.134, A.135, N.155, R.156, D.158, F.160, L.184, G.203, T.204, K.205, V.206, M.208, C.232, V.233, Y.234, G.255, M.258, L.259 Ligands: PO4.2 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.234 Hydrogen bonds: A:A.132, A:G.134, A:A.135, A:N.155, A:R.156, A:D.158, A:T.204, A:K.205, A:C.232, A:L.259 Water bridges: A:G.133, A:S.136, A:K.205 Salt bridges: A:K.205 pi-Cation interactions: A:R.156, A:R.156

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: S.67, K.71, D.107 Ligands: NAI.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.262 Salt bridges: A:K.71 PO4.3: 5 residues within 4Å: Chain A: M.68, P.69, N.70, K.71, Q.72 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.71, A:Q.72, A:Q.72 Water bridges: A:L.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michel, G. et al., Structures of Shikimate Dehydrogenase Aroe and its Paralog Ydib: A Common Structural Framework for Different Activities. J.Biol.Chem. (2003)

Release Date

2003-02-01

Peptides

HYPOTHETICAL SHIKIMATE 5-DEHYDROGENASE-LIKE PROTEIN YDIB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

HYPOTHETICAL SHIKIMATE 5-DEHYDROGENASE-LIKE PROTEIN YDIB

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