- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.3: 6 residues within 4Å:- Chain B: D.138, R.145
- Chain D: D.138, R.145
- Chain L: D.138, R.145
4 PLIP interactions:1 interactions with chain B, 2 interactions with chain L, 1 interactions with chain D- Hydrogen bonds: B:R.145, L:D.138, L:R.145, D:R.145
TRS.8: 6 residues within 4Å:- Chain A: D.138, R.145
- Chain C: D.138, R.145
- Chain E: D.138, R.145
4 PLIP interactions:2 interactions with chain C, 1 interactions with chain E, 1 interactions with chain A- Hydrogen bonds: C:D.138, C:R.145, E:R.145, A:R.145
TRS.12: 6 residues within 4Å:- Chain F: D.138, R.145
- Chain H: D.138, R.145
- Chain J: D.138, R.145
4 PLIP interactions:1 interactions with chain H, 2 interactions with chain F, 1 interactions with chain J- Hydrogen bonds: H:R.145, F:D.138, F:R.145, J:R.145
TRS.17: 6 residues within 4Å:- Chain G: D.138, R.145
- Chain I: D.138, R.145
- Chain K: D.138, R.145
4 PLIP interactions:2 interactions with chain I, 1 interactions with chain G, 1 interactions with chain K- Hydrogen bonds: I:D.138, I:R.145, G:R.145, K:R.145
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.6: 8 residues within 4Å:- Chain D: I.30, A.33, L.62, D.63, G.66, D.67
- Chain J: W.41, R.59
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain J- Hydrogen bonds: D:D.67, J:R.59
- Water bridges: D:R.59, J:R.59, J:R.59
EDO.15: 8 residues within 4Å:- Chain D: W.41, R.59
- Chain J: I.30, A.33, L.62, D.63, G.66, D.67
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain J- Hydrogen bonds: D:R.59, J:D.67
- Water bridges: D:R.59, D:R.59, J:R.59
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ceci, P. et al., The Dps Protein of Agrobacterium Tumefaciens Does not Bind to DNA But Protects It Toward Oxidative Cleavage: X-Ray Crystal Structure, Iron Binding, and Hydroxyl-Radical Scavenging Properties. J.Biol.Chem. (2003)
- Release Date
- 2003-05-29
- Peptides
- AGROBACTERIUM TUMEFACIENS DPS: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
AH
BI
CJ
DK
EL
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ceci, P. et al., The Dps Protein of Agrobacterium Tumefaciens Does not Bind to DNA But Protects It Toward Oxidative Cleavage: X-Ray Crystal Structure, Iron Binding, and Hydroxyl-Radical Scavenging Properties. J.Biol.Chem. (2003)
- Release Date
- 2003-05-29
- Peptides
- AGROBACTERIUM TUMEFACIENS DPS: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
AH
BI
CJ
DK
EL
F