- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 5 residues within 4Å:- Chain A: E.181, E.217, D.245, D.287
- Ligands: MQD.4
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.181, A:E.217, A:D.245, A:D.287, H2O.13
MG.7: 5 residues within 4Å:- Chain B: E.181, E.217, D.245, D.287
- Ligands: MQD.9
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.181, B:E.217, B:D.245, B:D.287, H2O.30
MG.12: 5 residues within 4Å:- Chain C: E.181, E.217, D.245, D.287
- Ligands: MQD.14
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.181, C:E.217, C:D.245, C:D.287, H2O.48
MG.17: 5 residues within 4Å:- Chain D: E.181, E.217, D.245, D.287
- Ligands: MQD.19
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.181, D:E.217, D:D.245, D:D.287, H2O.65
- 4 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
MRD.3: 7 residues within 4Å:- Chain A: P.25, F.26
- Chain B: W.16, H.54, D.57, F.94, T.95
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:W.16, B:F.94
- Hydrogen bonds: B:T.95
- Water bridges: B:N.92
MRD.8: 6 residues within 4Å:- Chain A: W.16, H.54, F.94, T.95
- Chain B: P.25, F.26
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:W.16, A:F.94
- Water bridges: A:N.92
MRD.13: 7 residues within 4Å:- Chain C: P.25, F.26
- Chain D: W.16, H.54, D.57, F.94, T.95
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:W.16, D:F.94
- Hydrogen bonds: D:T.95
- Water bridges: D:N.92
MRD.18: 6 residues within 4Å:- Chain C: W.16, H.54, F.94, T.95
- Chain D: P.25, F.26
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:W.16, C:F.94
- Water bridges: C:N.92
- 4 x MQD: 2-METHYLPENTANE-1,2,4-TRIOL(Non-covalent)
MQD.4: 10 residues within 4Å:- Chain A: W.16, H.54, T.90, F.94, W.137, E.181, E.217, H.220, D.287
- Ligands: MG.2
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:W.16, A:T.90, A:F.94, A:W.137
- Water bridges: A:W.16, A:D.257, A:D.257, A:D.287
MQD.9: 11 residues within 4Å:- Chain B: W.16, H.54, T.90, F.94, V.135, W.137, E.181, E.217, H.220, D.287
- Ligands: MG.7
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:W.16, B:T.90, B:F.94, B:V.135, B:W.137
- Water bridges: B:W.16, B:W.16, B:T.90, B:D.257, B:D.257, B:D.257, B:D.287, B:D.287
MQD.14: 10 residues within 4Å:- Chain C: W.16, H.54, T.90, F.94, W.137, E.181, E.217, H.220, D.287
- Ligands: MG.12
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:W.16, C:T.90, C:F.94, C:W.137
- Water bridges: C:W.16, C:D.257, C:D.257, C:D.287
MQD.19: 11 residues within 4Å:- Chain D: W.16, H.54, T.90, F.94, V.135, W.137, E.181, E.217, H.220, D.287
- Ligands: MG.17
13 PLIP interactions:13 interactions with chain D- Hydrophobic interactions: D:W.16, D:T.90, D:F.94, D:V.135, D:W.137
- Water bridges: D:W.16, D:W.16, D:T.90, D:D.257, D:D.257, D:D.257, D:D.287, D:D.287
- 2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.5: 4 residues within 4Å:- Chain A: Y.3, E.315, R.316
- Chain D: G.385
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:R.316, D:G.385
- Water bridges: A:R.316
TRS.15: 4 residues within 4Å:- Chain B: G.385
- Chain C: Y.3, E.315, R.316
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:G.385, C:R.316
- Water bridges: C:R.316
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.10: 4 residues within 4Å:- Chain A: R.331, R.334, D.336, E.337
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:R.331
- Hydrogen bonds: A:D.336, A:E.337
MPD.20: 4 residues within 4Å:- Chain C: R.331, R.334, D.336, E.337
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:R.331
- Hydrogen bonds: C:D.336, C:E.337
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramagopal, U.A. et al., Sad Manganese in Two Crystal Forms of Glucose Isomerase. Acta Crystallogr.,Sect.D (2003)
- Release Date
- 2003-01-30
- Peptides
- XYLOSE ISOMERASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
- 4 x MQD: 2-METHYLPENTANE-1,2,4-TRIOL(Non-covalent)
- 2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramagopal, U.A. et al., Sad Manganese in Two Crystal Forms of Glucose Isomerase. Acta Crystallogr.,Sect.D (2003)
- Release Date
- 2003-01-30
- Peptides
- XYLOSE ISOMERASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B