SMTL ID : 1ob9.1

Holliday Junction Resolving Enzyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: V.100, I.123, L.124 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.81 EDO.9: 3 residues within 4Å: Chain B: V.100, I.123, L.124 1 PLIP interactions: 1 interactions with chain B Water bridges: B:K.81

14 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain A: W.57, K.89, K.91, H.94 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.89, A:K.89, A:H.94 FMT.3: 5 residues within 4Å: Chain A: R.18, G.21, F.22, N.23 Ligands: FMT.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.21 Water bridges: A:N.23 FMT.4: 6 residues within 4Å: Chain A: N.46, T.79 Chain B: N.46, T.79, M.80 Ligands: FMT.12 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.46, B:T.79, A:N.46, A:N.46 FMT.5: 4 residues within 4Å: Chain A: R.18, N.23, A.24 Ligands: FMT.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.18, A:A.24 Water bridges: A:N.23 FMT.6: 3 residues within 4Å: Chain A: E.20, K.44, F.121 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.44 FMT.7: 2 residues within 4Å: Chain A: R.97, P.116 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.97, A:R.97 FMT.8: 4 residues within 4Å: Chain A: P.101, E.102, E.105, I.107 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.102, A:E.102, A:E.105 FMT.10: 4 residues within 4Å: Chain B: W.57, K.89, K.91, H.94 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.89, B:K.89, B:H.94 FMT.11: 5 residues within 4Å: Chain B: R.18, G.21, F.22, N.23 Ligands: FMT.13 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.21 Water bridges: B:N.23 FMT.12: 6 residues within 4Å: Chain A: N.46, T.79, M.80 Chain B: N.46, T.79 Ligands: FMT.4 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.46, B:N.46, A:N.46, A:T.79 FMT.13: 4 residues within 4Å: Chain B: R.18, N.23, A.24 Ligands: FMT.11 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.18, B:A.24 Water bridges: B:N.23 FMT.14: 3 residues within 4Å: Chain B: E.20, K.44, F.121 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.44 FMT.15: 2 residues within 4Å: Chain B: R.97, P.116 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.97, B:R.97 FMT.16: 4 residues within 4Å: Chain B: P.101, E.102, E.105, I.107 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.102, B:E.102, B:E.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Middleton, C.L. et al., Substrate Recognition and Catalysis by the Holliday Junction Resolving Enzyme Hje. Nucleic Acids Res. (2004)

Release Date

2004-10-15

Peptides

HOLLIDAY JUNCTION RESOLVASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

HOLLIDAY JUNCTION RESOLVASE

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