SMTL ID : 1obf.1

The crystal structure of Glyceraldehyde 3-phosphate Dehydrogenase from Alcaligenes xylosoxidans at 1.7A resolution.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.184, N.186, R.199, R.235 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.184 Water bridges: A:N.185, A:R.199, A:R.199 Salt bridges: A:R.199, A:R.235 SO4.2: 4 residues within 4Å: Chain A: S.153, T.212, G.213, A.214 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.153, A:S.153, A:G.213 Water bridges: A:T.156 SO4.4: 4 residues within 4Å: Chain B: T.184, N.186, R.199, R.235 3 PLIP interactions: 3 interactions with chain B Water bridges: B:N.186 Salt bridges: B:R.199, B:R.235 SO4.7: 4 residues within 4Å: Chain C: T.184, N.186, R.199, R.235 5 PLIP interactions: 5 interactions with chain C Water bridges: C:N.185, C:R.199, C:R.199 Salt bridges: C:R.199, C:R.235 SO4.8: 4 residues within 4Å: Chain C: S.153, T.212, G.213, A.214 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:S.153, C:S.153, C:T.212, C:G.213 Water bridges: C:T.155, C:T.156, C:T.156 SO4.10: 4 residues within 4Å: Chain D: T.184, N.186, R.199, R.235 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:T.184 Water bridges: D:N.186 Salt bridges: D:R.199, D:R.235

4 x K: POTASSIUM ION(Non-covalent)

K.3: 3 residues within 4Å: Chain A: N.185, N.186, Q.187 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:Q.187 K.5: 4 residues within 4Å: Chain B: N.185, N.186, Q.187 Ligands: PG4.6 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:N.185, B:Q.187, H2O.20 K.9: 3 residues within 4Å: Chain C: N.185, N.186, Q.187 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:Q.187 K.11: 4 residues within 4Å: Chain D: N.185, N.186, Q.187 Ligands: PG4.12 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:N.185, D:Q.187, H2O.39

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.6: 10 residues within 4Å: Chain B: N.185, N.186, Q.187, V.188, V.192, Y.193, H.194 Chain D: N.185 Ligands: K.5, PG4.12 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:N.186, D:N.185 PG4.12: 10 residues within 4Å: Chain B: N.185 Chain D: N.185, N.186, Q.187, V.188, V.192, Y.193, H.194 Ligands: PG4.6, K.11 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:N.185, D:N.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Antonyuk, S.V. et al., The Structure of Glyceraldehyde 3-Phosphate Dehydrogenase from Alcaligenes Xylosoxidans at 1.7 A Resolution. Acta Crystallogr.,Sect.D (2003)

Release Date

2003-06-12

Peptides

GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
O

B
P

C
O

D
P

GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE