SMTL ID : 1od5.1

Crystal structure of glycinin A3B4 subunit homohexamer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-hexamer

Ligands

6 x CO3: CARBONATE ION(Non-functional Binders)

CO3.1: 4 residues within 4Å: Chain A: R.49, H.57, Y.130, T.132 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.132 CO3.3: 5 residues within 4Å: Chain B: R.49, H.57, I.68, Y.130, T.132 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.57, B:Y.130, B:T.132, B:T.132 CO3.5: 4 residues within 4Å: Chain C: R.49, H.57, Y.130, T.132 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.132 CO3.7: 5 residues within 4Å: Chain D: R.49, H.57, I.68, Y.130, T.132 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:H.57, D:Y.130, D:T.132, D:T.132 CO3.9: 4 residues within 4Å: Chain E: R.49, H.57, Y.130, T.132 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:T.132 CO3.11: 5 residues within 4Å: Chain F: R.49, H.57, I.68, Y.130, T.132 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:H.57, F:Y.130, F:T.132, F:T.132

6 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain B: Y.379, H.382, E.431, Y.440 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.382, H2O.8 MG.4: 3 residues within 4Å: Chain A: H.382, E.431, Y.440 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.382, A:E.431 MG.6: 4 residues within 4Å: Chain D: Y.379, H.382, E.431, Y.440 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.382, H2O.16 MG.8: 3 residues within 4Å: Chain C: H.382, E.431, Y.440 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.382, C:E.431 MG.10: 4 residues within 4Å: Chain F: Y.379, H.382, E.431, Y.440 2 PLIP interactions: 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.382, H2O.24 MG.12: 3 residues within 4Å: Chain E: H.382, E.431, Y.440 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:H.382, E:E.431

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adachi, M. et al., Crystal Structure of Soybean 11S Globulin: Glycinin A3B4 Homohexamer. Proc.Natl.Acad.Sci.USA (2003)

Release Date

2003-06-02

Peptides

GLYCININ: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

GLYCININ