SMTL ID : 1od6.1

The Crystal Structure of Phosphopantetheine adenylyltransferase from Thermus Thermophilus in complex with 4'-phosphopantetheine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-hexamer

Ligands

6 x PNS: 4'-PHOSPHOPANTETHEINE(Non-covalent)

PNS.1: 12 residues within 4Å: Chain A: P.6, G.7, S.8, L.35, F.70, G.72, L.73, L.74, L.105, N.106 Chain C: M.131, E.134 10 PLIP interactions: 7 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:P.6, A:L.35 Hydrogen bonds: A:S.8, A:L.74, C:E.134, C:E.134 Water bridges: A:S.8, A:F.9, A:V.75, C:E.134 PNS.5: 12 residues within 4Å: Chain A: M.131, E.134 Chain B: P.6, G.7, S.8, L.35, F.70, G.72, L.73, L.74, L.105, N.106 10 PLIP interactions: 7 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:P.6, B:L.35 Hydrogen bonds: B:S.8, B:L.74, A:E.134, A:E.134 Water bridges: B:S.8, B:F.9, B:V.75, A:E.134 PNS.9: 12 residues within 4Å: Chain B: M.131, E.134 Chain C: P.6, G.7, S.8, L.35, F.70, G.72, L.73, L.74, L.105, N.106 10 PLIP interactions: 7 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: C:P.6, C:L.35 Hydrogen bonds: C:S.8, C:L.74, B:E.134, B:E.134 Water bridges: C:S.8, C:F.9, C:V.75, B:E.134 PNS.13: 12 residues within 4Å: Chain D: P.6, G.7, S.8, L.35, F.70, G.72, L.73, L.74, L.105, N.106 Chain E: M.131, E.134 9 PLIP interactions: 7 interactions with chain D, 2 interactions with chain E Hydrophobic interactions: D:P.6, D:L.35 Hydrogen bonds: D:S.8, D:L.74, E:E.134 Water bridges: D:S.8, D:F.9, D:V.75, E:E.134 PNS.17: 12 residues within 4Å: Chain E: P.6, G.7, S.8, L.35, F.70, G.72, L.73, L.74, L.105, N.106 Chain F: M.131, E.134 9 PLIP interactions: 7 interactions with chain E, 2 interactions with chain F Hydrophobic interactions: E:P.6, E:L.35 Hydrogen bonds: E:S.8, E:L.74, F:E.134 Water bridges: E:S.8, E:F.9, E:V.75, F:E.134 PNS.21: 12 residues within 4Å: Chain D: M.131, E.134 Chain F: P.6, G.7, S.8, L.35, F.70, G.72, L.73, L.74, L.105, N.106 9 PLIP interactions: 7 interactions with chain F, 2 interactions with chain D Hydrophobic interactions: F:P.6, F:L.35 Hydrogen bonds: F:S.8, F:L.74, D:E.134 Water bridges: F:S.8, F:F.9, F:V.75, D:E.134

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: R.22, A.121, T.122, R.123 Chain D: H.104, R.107, Q.108 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: H.16, R.91, S.128, S.129 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: A.83, Q.84, Y.110, L.113 Ligand excluded by PLIP SO4.6: 7 residues within 4Å: Chain B: R.22, A.121, T.122, R.123 Chain E: H.104, R.107, Q.108 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain B: H.16, R.91, S.128, S.129 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain B: A.83, Q.84, Y.110, L.113 Ligand excluded by PLIP SO4.10: 7 residues within 4Å: Chain C: R.22, A.121, T.122, R.123 Chain F: H.104, R.107, Q.108 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain C: H.16, R.91, S.128, S.129 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain C: A.83, Q.84, Y.110, L.113 Ligand excluded by PLIP SO4.14: 7 residues within 4Å: Chain A: H.104, R.107, Q.108 Chain D: R.22, A.121, T.122, R.123 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain D: H.16, R.91, S.128, S.129 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain D: A.83, Q.84, Y.110, L.113 Ligand excluded by PLIP SO4.18: 7 residues within 4Å: Chain B: H.104, R.107, Q.108 Chain E: R.22, A.121, T.122, R.123 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain E: H.16, R.91, S.128, S.129 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain E: A.83, Q.84, Y.110, L.113 Ligand excluded by PLIP SO4.22: 7 residues within 4Å: Chain C: H.104, R.107, Q.108 Chain F: R.22, A.121, T.122, R.123 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain F: H.16, R.91, S.128, S.129 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain F: A.83, Q.84, Y.110, L.113 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takahashi, H. et al., Structure and Implications for the Thermal Stability of Phosphopantetheine Adenylyltransferase from Thermus Thermophilus. Acta Crystallogr.,Sect.D (2004)

Release Date

2003-03-13

Peptides

PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE