SMTL ID : 1ody.1

HIV-1 PROTEASE COMPLEXED WITH AN INHIBITOR LP-130

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x LP1: 4-[2-(2-ACETYLAMINO-3-NAPHTALEN-1-YL-PROPIONYLAMINO)-4-METHYL-PENTANOYLAMINO]-3-HYDROXY-6-METHYL-HEPTANOIC ACID [1-(1-CARBAMOYL-2-NAPHTHALEN-1-YL-ETHYLCARBAMOYL)-PROPYL]-AMIDE(Non-covalent)

LP1.1: 26 residues within 4Å: Chain A: R.8, D.25, G.27, A.28, D.29, D.30, I.47, G.48, G.49, I.50, F.53, P.81, V.82, I.84 Chain B: R.8, D.25, G.27, A.28, D.29, I.47, G.48, G.49, I.50, P.81, V.82, I.84 25 PLIP interactions: 14 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:A.28, A:I.47, A:F.53, A:P.81, A:V.82, A:I.84, B:I.50, B:P.81, B:V.82, B:I.84 Hydrogen bonds: A:G.27, A:G.27, A:D.29, A:D.29, A:D.29, A:G.48, A:G.48, B:G.27, B:D.29, B:D.29, B:G.48, B:G.48 Water bridges: A:R.8, B:D.30, B:D.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kervinen, J. et al., Toward a universal inhibitor of retroviral proteases: comparative analysis of the interactions of LP-130 complexed with proteases from HIV-1, FIV, and EIAV. Protein Sci. (1998)

Release Date

1999-02-16

Peptides

HIV-1 PROTEASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 PROTEASE