SMTL ID : 1oe5.1

Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

1 x URA: URACIL(Non-covalent)

URA.1: 11 residues within 4Å: Chain A: G.60, M.61, N.62, P.63, G.64, M.68, P.74, F.75, S.114, N.140, H.216 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:M.61, A:N.62, A:F.75, A:N.140, A:N.140, A:H.216 Water bridges: A:M.68 pi-Stacking: A:F.75

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: P.65, E.112 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.153 Water bridges: A:V.113, A:S.114, A:S.218

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 4 residues within 4Å: Chain A: N.79, H.80, D.83, K.123 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.123 Hydrogen bonds: A:D.83 IPA.5: 4 residues within 4Å: Chain B: N.79, H.80, D.83, K.123 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:N.79 Hydrogen bonds: B:D.83

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4: 8 residues within 4Å: Chain A: S.20, V.31, Y.32, N.33, V.36, Y.37, P.94, E.95 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.31, A:N.33, A:E.95 Water bridges: A:V.96 Salt bridges: A:E.95, A:E.95 EPE.6: 8 residues within 4Å: Chain B: S.20, V.31, Y.32, N.33, V.36, Y.37, P.94, E.95 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.31, B:N.33, B:E.95

1 x DUR: 2'-DEOXYURIDINE(Non-functional Binders)

DUR.7: 3 residues within 4Å: Chain D: C.1, N.2, G.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wibley, J.E.A. et al., Structure and Specificity of the Vertebrate Anti-Mutator Uracil-DNA Glycosylase Smug1. Mol.Cell (2003)

Release Date

2003-07-11

Peptides

SINGLE-STRAND SELECTIVE MONOFUNCTIONAL URACIL DNA GLYCOSYLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SINGLE-STRAND SELECTIVE MONOFUNCTIONAL URACIL DNA GLYCOSYLASE

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