SMTL ID : 1oe6.1

Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-dimer

Ligands

2 x HMU: 5-HYDROXYMETHYL URACIL(Non-covalent)

HMU.1: 13 residues within 4Å: Chain A: G.60, M.61, N.62, P.63, G.64, G.67, M.68, P.74, F.75, E.112, N.140, H.216 Ligands: GOL.3 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:M.61, A:N.62, A:G.64, A:G.64, A:M.68, A:F.75, A:G.76, A:N.140, A:N.140, A:H.216 Water bridges: A:E.112 pi-Stacking: A:F.75 HMU.2: 5 residues within 4Å: Chain A: P.65, S.111, E.112, V.113 Ligands: GOL.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.113 Water bridges: A:S.114

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: M.61, N.62, E.112, S.218 Chain C: C.1 Ligands: HMU.1, HMU.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.62, A:S.218

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.4: 8 residues within 4Å: Chain A: L.168, E.169, I.170, C.171, D.172, E.173, A.174, L.175 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.172, A:E.173 Hydrogen bonds: A:L.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wibley, J.E.A. et al., Structure and Specificity of the Vertebrate Anti-Mutator Uracil-DNA Glycosylase Smug1. Mol.Cell (2003)

Release Date

2003-07-11

Peptides

SINGLE-STRAND SELECTIVE MONOFUNCTIONAL URACIL DNA GLYCOSYLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SINGLE-STRAND SELECTIVE MONOFUNCTIONAL URACIL DNA GLYCOSYLASE

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