SMTL ID : 1oec.1

FGFr2 kinase domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.173, L.195, R.197, R.212 Ligands: SO4.2 13 PLIP interactions: 11 interactions with chain A, 2 interactions with chain C Water bridges: A:R.173, A:R.173, A:R.173, A:R.173, A:R.197, A:N.210, A:R.212, C:K.207, C:K.207 Salt bridges: A:K.74, A:R.173, A:R.197, A:R.212 SO4.2: 5 residues within 4Å: Chain A: T.209, G.211 Chain B: K.74 Chain D: R.226 Ligands: SO4.1 9 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B, 2 interactions with chain D Hydrogen bonds: A:T.209, A:T.209, A:G.211 Water bridges: A:N.210, A:R.212, A:R.212, D:R.226 Salt bridges: B:K.74, D:R.226 SO4.4: 5 residues within 4Å: Chain B: R.173, L.195, R.197, R.212 Ligands: SO4.5 13 PLIP interactions: 11 interactions with chain B, 2 interactions with chain D Water bridges: B:R.173, B:R.173, B:R.173, B:R.173, B:R.197, B:N.210, B:R.212, D:K.207, D:K.207 Salt bridges: B:K.74, B:R.173, B:R.197, B:R.212 SO4.5: 5 residues within 4Å: Chain A: K.74 Chain B: T.209, G.211 Chain C: R.226 Ligands: SO4.4 9 PLIP interactions: 6 interactions with chain B, 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: B:T.209, B:T.209, B:G.211 Water bridges: B:N.210, B:R.212, B:R.212, C:R.226 Salt bridges: C:R.226, A:K.74 SO4.7: 5 residues within 4Å: Chain C: R.173, L.195, R.197, R.212 Ligands: SO4.8 13 PLIP interactions: 11 interactions with chain C, 2 interactions with chain A Water bridges: C:R.173, C:R.173, C:R.173, C:R.173, C:R.197, C:N.210, C:R.212, A:K.207, A:K.207 Salt bridges: C:K.74, C:R.173, C:R.197, C:R.212 SO4.8: 5 residues within 4Å: Chain B: R.226 Chain C: T.209, G.211 Chain D: K.74 Ligands: SO4.7 9 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D, 6 interactions with chain C Water bridges: B:R.226, C:N.210, C:R.212, C:R.212 Salt bridges: B:R.226, D:K.74 Hydrogen bonds: C:T.209, C:T.209, C:G.211 SO4.10: 5 residues within 4Å: Chain D: R.173, L.195, R.197, R.212 Ligands: SO4.11 13 PLIP interactions: 11 interactions with chain D, 2 interactions with chain B Water bridges: D:R.173, D:R.173, D:R.173, D:R.173, D:R.197, D:N.210, D:R.212, B:K.207, B:K.207 Salt bridges: D:K.74, D:R.173, D:R.197, D:R.212 SO4.11: 5 residues within 4Å: Chain A: R.226 Chain C: K.74 Chain D: T.209, G.211 Ligands: SO4.10 9 PLIP interactions: 6 interactions with chain D, 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: D:T.209, D:T.209, D:G.211 Water bridges: D:N.210, D:R.212, D:R.212, A:R.226 Salt bridges: A:R.226, C:K.74

4 x AA2: 4-ARYL-2-PHENYLAMINO PYRIMIDINE(Non-covalent)

AA2.3: 14 residues within 4Å: Chain A: K.33, L.35, E.37, G.38, V.43, A.63, V.112, E.113, Y.114, A.115, S.116, G.118, L.181, D.192 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.43, A:L.181 Hydrogen bonds: A:A.115, A:A.115 Water bridges: A:C.39, A:D.192 Salt bridges: A:E.122 AA2.6: 14 residues within 4Å: Chain B: K.33, L.35, E.37, G.38, V.43, A.63, V.112, E.113, Y.114, A.115, S.116, G.118, L.181, D.192 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.43, B:L.181 Hydrogen bonds: B:A.115, B:A.115 Water bridges: B:C.39, B:D.192 Salt bridges: B:E.122 AA2.9: 14 residues within 4Å: Chain C: K.33, L.35, E.37, G.38, V.43, A.63, V.112, E.113, Y.114, A.115, S.116, G.118, L.181, D.192 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:V.43, C:L.181 Hydrogen bonds: C:A.115, C:A.115 Water bridges: C:C.39, C:D.192 Salt bridges: C:E.122 AA2.12: 14 residues within 4Å: Chain D: K.33, L.35, E.37, G.38, V.43, A.63, V.112, E.113, Y.114, A.115, S.116, G.118, L.181, D.192 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:V.43, D:L.181 Hydrogen bonds: D:A.115, D:A.115 Water bridges: D:C.39, D:D.192 Salt bridges: D:E.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ceska, T.A. et al., The Crystal Structure of the Fgfr2 Tyrosine Kinase Domain in Complex with 4-Aryl-2-Phenylamino Pyrimidine Angiogenesis Inhibitors. To be Published

Release Date

2004-10-27

Peptides

FIBROBLAST GROWTH FACTOR RECEPTOR 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

FIBROBLAST GROWTH FACTOR RECEPTOR 2

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