SMTL ID : 1ofg.2 (1 other biounit)

GLUCOSE-FRUCTOSE OXIDOREDUCTASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 33 residues within 4Å: Chain A: G.38, L.39, G.40, K.41, Y.42, S.64, G.65, N.66, K.69, Y.87, I.105, L.106, P.107, N.108, L.110, H.111, E.128, K.129, P.130, G.155, R.157, A.196, W.199, R.200, Y.217, Y.296 Chain C: V.10, P.11, T.13, P.14, A.15, G.16, R.17 31 PLIP interactions: 27 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: A:Y.42 Hydrogen bonds: A:L.39, A:K.41, A:Y.42, A:G.65, A:N.66, A:K.69, A:Y.87, A:L.106, A:E.128, A:K.129, A:R.157, A:R.200, A:D.213, A:Y.217, C:P.11, C:A.15, C:R.17 Water bridges: A:G.40, A:Y.42, A:A.43, A:K.69, A:N.108, A:R.157, A:R.157, A:P.195, C:R.17 Salt bridges: A:K.69, A:R.200 pi-Stacking: A:Y.42 pi-Cation interactions: A:K.129 NDP.2: 33 residues within 4Å: Chain B: G.38, L.39, G.40, K.41, Y.42, S.64, G.65, N.66, K.69, Y.87, I.105, L.106, P.107, N.108, L.110, H.111, E.128, K.129, P.130, G.155, R.157, A.196, W.199, R.200, Y.217, Y.296 Chain D: V.10, P.11, T.13, P.14, A.15, G.16, R.17 32 PLIP interactions: 28 interactions with chain B, 4 interactions with chain D Hydrophobic interactions: B:Y.42 Hydrogen bonds: B:L.39, B:K.41, B:Y.42, B:G.65, B:N.66, B:K.69, B:Y.87, B:Y.87, B:L.106, B:E.128, B:K.129, B:R.157, B:R.200, B:D.213, B:D.213, D:P.11, D:A.15, D:R.17 Water bridges: B:G.40, B:A.43, B:K.69, B:N.108, B:R.157, B:R.157, B:P.195, B:Y.217, D:R.17 Salt bridges: B:K.69, B:R.200 pi-Stacking: B:Y.42 pi-Cation interactions: B:K.129 NDP.3: 33 residues within 4Å: Chain A: V.10, P.11, T.13, P.14, A.15, G.16, R.17 Chain C: G.38, L.39, G.40, K.41, Y.42, S.64, G.65, N.66, K.69, Y.87, I.105, L.106, P.107, N.108, L.110, H.111, E.128, K.129, P.130, G.155, R.157, A.196, W.199, R.200, Y.217, Y.296 31 PLIP interactions: 27 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:Y.42 Hydrogen bonds: C:L.39, C:K.41, C:Y.42, C:G.65, C:N.66, C:K.69, C:Y.87, C:L.106, C:E.128, C:K.129, C:R.157, C:R.200, C:D.213, C:Y.217, A:P.11, A:A.15, A:R.17 Water bridges: C:G.40, C:Y.42, C:A.43, C:K.69, C:N.108, C:R.157, C:R.157, C:P.195, A:R.17 Salt bridges: C:K.69, C:R.200 pi-Stacking: C:Y.42 pi-Cation interactions: C:K.129 NDP.4: 33 residues within 4Å: Chain B: V.10, P.11, T.13, P.14, A.15, G.16, R.17 Chain D: G.38, L.39, G.40, K.41, Y.42, S.64, G.65, N.66, K.69, Y.87, I.105, L.106, P.107, N.108, L.110, H.111, E.128, K.129, P.130, G.155, R.157, A.196, W.199, R.200, Y.217, Y.296 32 PLIP interactions: 28 interactions with chain D, 4 interactions with chain B Hydrophobic interactions: D:Y.42 Hydrogen bonds: D:L.39, D:K.41, D:Y.42, D:G.65, D:N.66, D:K.69, D:Y.87, D:Y.87, D:L.106, D:E.128, D:K.129, D:R.157, D:R.200, D:D.213, D:D.213, B:P.11, B:A.15, B:R.17 Water bridges: D:G.40, D:A.43, D:K.69, D:N.108, D:R.157, D:R.157, D:P.195, D:Y.217, B:R.17 Salt bridges: D:K.69, D:R.200 pi-Stacking: D:Y.42 pi-Cation interactions: D:K.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kingston, R.L. et al., The structure of glucose-fructose oxidoreductase from Zymomonas mobilis: an osmoprotective periplasmic enzyme containing non-dissociable NADP. Structure (1996)

Release Date

1997-04-21

Peptides

GLUCOSE-FRUCTOSE OXIDOREDUCTASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
E

D
F

GLUCOSE-FRUCTOSE OXIDOREDUCTASE

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