SMTL ID : 1ofn.1

Purification, crystallisation and preliminary structural studies of dTDP-4-keto-6-deoxy-glucose-5-epimerase (EvaD) from Amycolatopsis orientalis; the fourth enzyme in the dTDP-L-epivancosamine biosynthetic pathway.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: F.19, D.21, R.23, G.24, L.25, L.26 Chain B: R.60 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.21, A:R.23, B:R.60, B:R.60 GOL.2: 8 residues within 4Å: Chain A: T.49, S.132, Y.133, M.134 Chain B: P.29, Y.76, S.132, M.134 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Water bridges: A:S.132, A:M.134, B:Y.76, B:M.134 Hydrogen bonds: B:S.132 GOL.3: 1 residues within 4Å: Chain A: M.83 No protein-ligand interaction detected (PLIP) GOL.4: 6 residues within 4Å: Chain B: I.50, H.63, K.73, H.120, Y.133, L.135 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.73, B:H.120, B:Y.133 Water bridges: B:T.65, B:K.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Merkel, A.B. et al., Purification, Crystallization and Preliminary Structural Studies of Dtdp-4-Keto-6-Deoxy-Glucose-5-Epimerase (Evad) from Amycolatopsis Orientalis, the Fourth Enzyme in the Dtdp-L-Epivancosamine Biosynthetic Pathway. Acta Crystallogr.,Sect.D (2002)

Release Date

2004-04-15

Peptides

PCZA361.16: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PCZA361.16

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