SMTL ID : 1ofz.1

Crystal structure of fungal lectin : six-bladed beta-propeller fold and novel fucose recognition mode for aleuria aurantia lectin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

8 x FUL: beta-L-fucopyranose(Non-covalent)

FUL.1: 6 residues within 4Å: Chain A: R.24, E.36, I.74, I.76, Y.92, W.97 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.74, A:I.76, A:Y.92 Hydrogen bonds: A:R.24, A:E.36 Water bridges: A:E.36, A:Q.38, A:Y.92, A:W.97 Salt bridges: A:R.24 FUL.2: 11 residues within 4Å: Chain A: R.77, E.89, V.91, G.100, Q.101, L.102, P.128, I.130, W.149, W.153 Ligands: FUC.6 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.128, A:I.130, A:W.149 Hydrogen bonds: A:E.89, A:Q.101, A:L.102 Water bridges: A:T.99 Salt bridges: A:R.77 FUL.3: 7 residues within 4Å: Chain A: W.120, R.131, E.146, A.157, L.178, W.194, W.199 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.120, A:L.178 Hydrogen bonds: A:R.131, A:E.146, A:A.157 Salt bridges: A:R.131 FUL.5: 7 residues within 4Å: Chain A: W.219, R.226, E.238, I.274, I.276, W.292, W.298 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.219, A:I.274, A:I.276 Hydrogen bonds: A:R.226, A:E.238 Water bridges: A:W.298 Salt bridges: A:R.226 FUL.7: 6 residues within 4Å: Chain B: R.24, E.36, I.74, I.76, Y.92, W.97 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:I.74, B:I.76, B:Y.92 Hydrogen bonds: B:R.24, B:E.36 Water bridges: B:E.36, B:Q.38, B:W.97 Salt bridges: B:R.24 FUL.9: 7 residues within 4Å: Chain B: W.120, R.131, E.146, A.157, L.178, W.194, W.199 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:W.120, B:L.178 Hydrogen bonds: B:R.131, B:E.146, B:A.157 Salt bridges: B:R.131 FUL.11: 6 residues within 4Å: Chain B: R.226, E.238, I.274, I.276, W.292, W.298 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.274, B:I.276, B:W.292 Hydrogen bonds: B:R.226, B:E.238 Water bridges: B:W.298 Salt bridges: B:R.226 FUL.12: 11 residues within 4Å: Chain B: R.77, E.89, V.91, G.100, Q.101, L.102, P.128, I.130, W.149, W.153 Ligands: FUC.8 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:P.128, B:I.130, B:W.149 Hydrogen bonds: B:Y.79, B:E.89, B:Q.101, B:L.102 Water bridges: B:R.77, B:R.77 Salt bridges: B:R.77

4 x FUC: alpha-L-fucopyranose(Non-covalent)

FUC.4: 10 residues within 4Å: Chain A: I.173, R.177, R.179, E.191, Y.200, G.202, G.203, F.204, Y.241, W.245 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.173, A:Y.241 Hydrogen bonds: A:R.179, A:E.191, A:G.203, A:F.204 Water bridges: A:Y.200, A:V.201, A:G.203, A:W.245 Salt bridges: A:R.179 FUC.6: 11 residues within 4Å: Chain A: R.77, E.89, V.91, G.100, Q.101, L.102, P.128, I.130, W.149, W.153 Ligands: FUL.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.128, A:W.149 Hydrogen bonds: A:E.89, A:Q.101, A:Q.101, A:L.102 Water bridges: A:T.99 Salt bridges: A:R.77 FUC.8: 10 residues within 4Å: Chain B: R.77, E.89, G.100, Q.101, L.102, P.128, I.130, W.149, W.153 Ligands: FUL.12 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:P.128, B:I.130, B:W.149 Hydrogen bonds: B:E.89, B:Q.101, B:Q.101, B:L.102 Water bridges: B:R.77 Salt bridges: B:R.77 FUC.10: 9 residues within 4Å: Chain B: I.173, R.179, E.191, Y.200, G.202, G.203, F.204, Y.241, W.245 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:I.173, B:Y.241 Hydrogen bonds: B:R.179, B:E.191, B:Y.200, B:G.203, B:F.204 Water bridges: B:R.177, B:G.203, B:W.245 Salt bridges: B:R.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wimmerova, M. et al., Crystal Structure of Fungal Lectin: Six-Bladed {Beta}-Propeller Fold and Novel Fucose Recognition Mode for Aleuria Aurantia Lectin. J.Biol.Chem. (2003)

Release Date

2003-07-24

Peptides

FUCOSE-SPECIFIC LECTIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

FUCOSE-SPECIFIC LECTIN