SMTL ID : 1og6.1

ydhF, an aldo-keto reductase from E.coli complexed with NADPH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-trimer

Ligands

3 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 27 residues within 4Å: Chain A: G.20, Y.21, W.22, R.23, D.50, Y.55, H.128, R.129, S.158, N.159, Q.180, W.209, S.210, C.211, L.212, G.213, G.214, G.215, F.218, E.243, I.260, I.261, G.262, S.263, G.264, K.265, R.268 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:W.209 Hydrogen bonds: A:W.22, A:R.23, A:D.50, A:H.128, A:R.129, A:S.158, A:N.159, A:Q.180, A:S.210, A:C.211, A:L.212, A:G.214, A:G.215, A:E.243, A:I.261, A:G.262, A:G.262, A:S.263, A:G.264, A:K.265, A:R.268 Water bridges: A:R.268, A:R.268 Salt bridges: A:R.23, A:K.265, A:R.268 pi-Stacking: A:W.22, A:W.209, A:F.218 pi-Cation interactions: A:R.268, A:R.268 NAP.2: 20 residues within 4Å: Chain B: G.20, W.22, R.23, D.50, Y.55, H.128, R.129, S.158, N.159, Q.180, W.209, S.210, F.218, E.243, I.260, G.262, S.263, G.264, K.265, R.268 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:W.22, B:R.23, B:S.158, B:S.158, B:N.159, B:Q.180, B:S.210, B:E.243, B:G.264, B:K.265 Water bridges: B:W.27, B:R.129, B:G.262, B:G.262 Salt bridges: B:R.23, B:K.265, B:R.268 pi-Stacking: B:W.22, B:W.209 pi-Cation interactions: B:R.268 NAP.3: 26 residues within 4Å: Chain C: G.20, W.22, R.23, D.50, Y.55, K.83, H.128, R.129, S.158, N.159, Q.180, W.209, S.210, C.211, L.212, G.213, G.214, G.215, F.218, E.243, I.260, G.262, S.263, G.264, K.265, R.268 27 PLIP interactions: 27 interactions with chain C Hydrogen bonds: C:W.22, C:R.23, C:Y.55, C:H.128, C:S.158, C:S.158, C:N.159, C:Q.180, C:S.210, C:L.212, C:G.214, C:G.215, C:E.243, C:G.262, C:G.264, C:K.265, C:R.268, C:R.268 Salt bridges: C:R.23, C:K.265, C:R.268 pi-Stacking: C:W.22, C:W.209, C:W.209, C:F.218 pi-Cation interactions: C:R.268, C:R.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeudy, S. et al., Crystal Structure of Ydhf, an Aldo-Keto Reductase from Escherichia Coli. To be Published

Release Date

2003-05-29

Peptides

HYPOTHETICAL OXIDOREDUCTASE YDHF: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

HYPOTHETICAL OXIDOREDUCTASE YDHF