- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-10-mer
- Ligands
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 10 x RP5: 5-O-phosphono-beta-D-ribofuranose(Non-covalent)
RP5.2: 10 residues within 4Å:- Chain A: D.28, G.30, L.31, P.32, H.98, P.119, Y.120
- Chain E: H.20, V.129, F.131
9 PLIP interactions:7 interactions with chain A, 2 interactions with chain E- Hydrogen bonds: A:G.30, A:G.30, A:Y.120, A:Y.120, A:N.122
- Salt bridges: A:H.98, A:K.102, E:H.20, E:H.20
RP5.3: 10 residues within 4Å:- Chain A: H.20, V.129, F.131
- Chain B: D.28, G.30, L.31, P.32, H.98, P.119, Y.120
12 PLIP interactions:5 interactions with chain A, 7 interactions with chain B- Hydrogen bonds: A:F.131, B:D.28, B:G.30, B:G.30, B:Y.120, B:Y.120
- Water bridges: A:H.20, A:H.20
- Salt bridges: A:H.20, A:H.20, B:H.98, B:K.102
RP5.4: 9 residues within 4Å:- Chain B: H.20, F.131
- Chain C: D.28, G.30, L.31, P.32, H.98, P.119, Y.120
11 PLIP interactions:6 interactions with chain C, 5 interactions with chain B- Hydrogen bonds: C:D.28, C:G.30, C:G.30, C:Y.120, C:Y.120, B:F.131
- Salt bridges: C:H.98, B:H.20, B:H.20
- Water bridges: B:H.20, B:H.20
RP5.6: 10 residues within 4Å:- Chain C: H.20, V.129, F.131
- Chain D: D.28, G.30, L.31, P.32, H.98, P.119, Y.120
10 PLIP interactions:7 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:G.30, D:G.30, D:Y.120, D:N.122
- Water bridges: D:K.102, C:H.20
- Salt bridges: D:H.98, D:K.102, C:H.20, C:H.20
RP5.7: 9 residues within 4Å:- Chain D: H.20, F.131
- Chain E: D.28, G.30, L.31, P.32, H.98, P.119, Y.120
11 PLIP interactions:7 interactions with chain E, 4 interactions with chain D- Hydrogen bonds: E:D.28, E:G.30, E:G.30, E:Y.120, E:Y.120
- Salt bridges: E:H.98, E:H.98, D:H.20, D:H.20
- Water bridges: D:H.20, D:H.20
RP5.9: 10 residues within 4Å:- Chain F: D.28, G.30, L.31, P.32, H.98, P.119, Y.120
- Chain J: H.20, V.129, F.131
9 PLIP interactions:7 interactions with chain F, 2 interactions with chain J- Hydrogen bonds: F:G.30, F:G.30, F:Y.120, F:Y.120, F:N.122
- Salt bridges: F:H.98, F:K.102, J:H.20, J:H.20
RP5.10: 10 residues within 4Å:- Chain F: H.20, V.129, F.131
- Chain G: D.28, G.30, L.31, P.32, H.98, P.119, Y.120
12 PLIP interactions:5 interactions with chain F, 7 interactions with chain G- Hydrogen bonds: F:F.131, G:D.28, G:G.30, G:G.30, G:Y.120, G:Y.120
- Water bridges: F:H.20, F:H.20
- Salt bridges: F:H.20, F:H.20, G:H.98, G:K.102
RP5.11: 9 residues within 4Å:- Chain G: H.20, F.131
- Chain H: D.28, G.30, L.31, P.32, H.98, P.119, Y.120
11 PLIP interactions:6 interactions with chain H, 5 interactions with chain G- Hydrogen bonds: H:D.28, H:G.30, H:G.30, H:Y.120, H:Y.120, G:F.131
- Salt bridges: H:H.98, G:H.20, G:H.20
- Water bridges: G:H.20, G:H.20
RP5.13: 10 residues within 4Å:- Chain H: H.20, V.129, F.131
- Chain I: D.28, G.30, L.31, P.32, H.98, P.119, Y.120
10 PLIP interactions:7 interactions with chain I, 3 interactions with chain H- Hydrogen bonds: I:G.30, I:G.30, I:Y.120, I:N.122
- Water bridges: I:K.102, H:H.20
- Salt bridges: I:H.98, I:K.102, H:H.20, H:H.20
RP5.14: 9 residues within 4Å:- Chain I: H.20, F.131
- Chain J: D.28, G.30, L.31, P.32, H.98, P.119, Y.120
12 PLIP interactions:9 interactions with chain J, 3 interactions with chain I- Hydrogen bonds: J:D.28, J:G.30, J:G.30, J:Y.120, J:Y.120, J:Y.120
- Water bridges: J:K.102, I:H.20
- Salt bridges: J:H.98, J:H.98, I:H.20, I:H.20
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, M.-S. et al., Crystal Structures of Rbsd Leading to the Identification of Cytoplasmic Sugar-Binding Proteins with a Novel Folding Architecture. J.Biol.Chem. (2003)
- Release Date
- 2003-09-01
- Peptides
- HIGH AFFINITY RIBOSE TRANSPORT PROTEIN RBSD: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-10-mer
- Ligands
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 10 x RP5: 5-O-phosphono-beta-D-ribofuranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, M.-S. et al., Crystal Structures of Rbsd Leading to the Identification of Cytoplasmic Sugar-Binding Proteins with a Novel Folding Architecture. J.Biol.Chem. (2003)
- Release Date
- 2003-09-01
- Peptides
- HIGH AFFINITY RIBOSE TRANSPORT PROTEIN RBSD: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E