SMTL ID : 1ohg.2 (3 other biounits)

STRUCTURE OF THE DSDNA BACTERIOPHAGE HK97 MATURE EMPTY CAPSID

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.45 Å

Oligo State

homo-35-mer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.191 Chain F: E.189 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain A Hydrogen bonds: F:E.189 Salt bridges: A:R.191 SO4.3: 2 residues within 4Å: Chain H: R.191 Chain M: E.189 2 PLIP interactions: 1 interactions with chain M, 1 interactions with chain H Hydrogen bonds: M:E.189 Salt bridges: H:R.191 SO4.5: 2 residues within 4Å: Chain O: R.191 Chain T: E.189 2 PLIP interactions: 1 interactions with chain O, 1 interactions with chain T Salt bridges: O:R.191 Hydrogen bonds: T:E.189 SO4.7: 2 residues within 4Å: Chain 0: E.189 Chain V: R.191 2 PLIP interactions: 1 interactions with chain 0, 1 interactions with chain V Hydrogen bonds: 0:E.189 Salt bridges: V:R.191 SO4.9: 2 residues within 4Å: Chain 2: R.191 Chain 7: E.189 2 PLIP interactions: 1 interactions with chain 7, 1 interactions with chain 2 Hydrogen bonds: 7:E.189 Salt bridges: 2:R.191

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 9 residues within 4Å: Chain 1: R.191 Chain 8: R.191 Chain G: R.191 Chain N: R.191 Chain U: R.191 Ligands: CL.4, CL.6, CL.8, CL.10 Ligand excluded by PLIP CL.4: 9 residues within 4Å: Chain 1: R.191 Chain 8: R.191 Chain G: R.191 Chain N: R.191 Chain U: R.191 Ligands: CL.2, CL.6, CL.8, CL.10 Ligand excluded by PLIP CL.6: 9 residues within 4Å: Chain 1: R.191 Chain 8: R.191 Chain G: R.191 Chain N: R.191 Chain U: R.191 Ligands: CL.2, CL.4, CL.8, CL.10 Ligand excluded by PLIP CL.8: 9 residues within 4Å: Chain 1: R.191 Chain 8: R.191 Chain G: R.191 Chain N: R.191 Chain U: R.191 Ligands: CL.2, CL.4, CL.6, CL.10 Ligand excluded by PLIP CL.10: 9 residues within 4Å: Chain 1: R.191 Chain 8: R.191 Chain G: R.191 Chain N: R.191 Chain U: R.191 Ligands: CL.2, CL.4, CL.6, CL.8 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Helgstrand, C. et al., The Refined Structure of a Protein Catenane: The Hk97 Bacteriophage Capsid at 3.44A Resolution. J.Mol.Biol. (2003)

Release Date

2003-12-11

Peptides

MAJOR CAPSID PROTEIN: ABCDEFGHIJKLMNOPQRSTUVWXYZ012345678

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
A

I
B

J
C

K
D

L
E

M
F

N
G

O
A

P
B

Q
C

R
D

S
E

T
F

U
G

V
A

W
B

X
C

Y
D

Z
E

0
F

1
G

2
A

3
B

4
C

5
D

6
E

7
F

8
G

MAJOR CAPSID PROTEIN

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