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SMTL ID : 1oi6.1
Structure determination of the TMP-complex of EvaD
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.40 Å
Oligo State
homo-dimer
Ligands
2 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.1:
8 residues within 4Å:
Chain A:
Y.76
,
S.132
,
Y.133
,
M.134
Chain B:
T.49
,
S.132
,
Y.133
,
M.134
8
PLIP interactions
:
5 interactions with chain A
,
3 interactions with chain B
Hydrogen bonds:
A:S.132
,
A:S.132
,
A:Y.133
,
B:T.49
Water bridges:
A:Y.76
,
A:M.134
,
B:S.132
,
B:M.134
GOL.3:
1 residues within 4Å:
Chain A:
M.83
1
PLIP interactions
:
1 interactions with chain A
Hydrogen bonds:
A:S.101
2 x
TMP
:
THYMIDINE-5'-PHOSPHATE
(Non-covalent)
TMP.2:
6 residues within 4Å:
Chain A:
Q.48
,
Y.139
,
R.169
Chain B:
R.23
,
L.26
,
L.28
16
PLIP interactions
:
9 interactions with chain A
,
7 interactions with chain B
Hydrophobic interactions:
A:Y.139
,
A:Y.139
,
B:L.26
Water bridges:
A:Q.48
,
A:R.60
,
A:H.63
,
A:Y.139
,
B:R.23
,
B:R.23
,
B:R.23
,
B:R.23
,
B:R.23
Salt bridges:
A:H.63
,
A:R.169
,
B:R.23
pi-Stacking:
A:Y.139
TMP.4:
7 residues within 4Å:
Chain A:
R.23
,
L.26
,
L.28
Chain B:
Q.48
,
I.50
,
Y.139
,
R.169
19
PLIP interactions
:
13 interactions with chain B
,
6 interactions with chain A
Hydrophobic interactions:
B:I.50
,
B:Y.139
,
B:Y.139
,
A:L.26
Hydrogen bonds:
B:Q.48
Water bridges:
B:Q.48
,
B:R.60
,
B:R.60
,
B:H.63
,
B:Y.139
,
B:Y.139
,
A:R.23
,
A:R.23
,
A:R.23
,
A:R.23
Salt bridges:
B:H.63
,
B:R.169
,
A:R.23
pi-Stacking:
B:Y.139
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Merkel, A.B. et al., The Position of a Key Tyrosine in Dtdp-4-Keto-6-Deoxy-D-Glucose-5-Epimerase (Evad) Alters the Substrate Profile for This Rmlc-Like Enzyme. J.Biol.Chem. (2004)
Release Date
2004-06-03
Peptides
PCZA361.16:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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2° Structure
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PCZA361.16
Related Entries With Identical Sequence
1ofn.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
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