- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 8 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 10 residues within 4Å:- Chain A: N.29, G.31, N.32, G.74, S.75, G.76, T.115, S.116
- Ligands: PO4.3, 2HA.4
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.29, A:N.32, A:G.76, A:S.116
- Water bridges: A:S.116, A:S.116
PO4.3: 10 residues within 4Å:- Chain A: G.31, N.32, E.117, H.141, H.143, H.212
- Ligands: ZN.1, PO4.2, 2HA.4, GOL.6
13 PLIP interactions:10 interactions with chain A, 3 interactions with chain C- Hydrogen bonds: A:G.31, A:N.32, A:E.117
- Water bridges: A:N.29, A:S.116, A:S.116, A:E.117, C:E.171, C:E.171, C:E.171
- Salt bridges: A:H.141, A:H.143, A:H.212
PO4.11: 10 residues within 4Å:- Chain B: N.29, G.31, N.32, G.74, S.75, G.76, T.115, S.116
- Ligands: PO4.12, 2HA.13
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.29, B:N.32, B:G.76, B:S.116
- Water bridges: B:S.116, B:S.116
PO4.12: 10 residues within 4Å:- Chain B: G.31, N.32, E.117, H.141, H.143, H.212
- Ligands: ZN.10, PO4.11, 2HA.13, GOL.15
13 PLIP interactions:3 interactions with chain A, 10 interactions with chain B- Water bridges: A:E.171, A:E.171, A:E.171, B:N.29, B:S.116, B:S.116, B:E.117
- Hydrogen bonds: B:G.31, B:N.32, B:E.117
- Salt bridges: B:H.141, B:H.143, B:H.212
PO4.20: 10 residues within 4Å:- Chain C: N.29, G.31, N.32, G.74, S.75, G.76, T.115, S.116
- Ligands: PO4.21, 2HA.22
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:N.29, C:N.32, C:G.76, C:S.116
- Water bridges: C:S.116, C:S.116
PO4.21: 10 residues within 4Å:- Chain C: G.31, N.32, E.117, H.141, H.143, H.212
- Ligands: ZN.19, PO4.20, 2HA.22, GOL.24
13 PLIP interactions:10 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:G.31, C:N.32, C:E.117
- Water bridges: C:N.29, C:S.116, C:S.116, C:E.117, D:E.171, D:E.171, D:E.171
- Salt bridges: C:H.141, C:H.143, C:H.212
PO4.29: 10 residues within 4Å:- Chain D: N.29, G.31, N.32, G.74, S.75, G.76, T.115, S.116
- Ligands: PO4.30, 2HA.31
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:N.29, D:N.32, D:G.76, D:S.116
- Water bridges: D:S.116, D:S.116
PO4.30: 10 residues within 4Å:- Chain D: G.31, N.32, E.117, H.141, H.143, H.212
- Ligands: ZN.28, PO4.29, 2HA.31, GOL.33
13 PLIP interactions:10 interactions with chain D, 3 interactions with chain B- Hydrogen bonds: D:G.31, D:N.32, D:E.117
- Water bridges: D:N.29, D:S.116, D:S.116, D:E.117, B:E.171, B:E.171, B:E.171
- Salt bridges: D:H.141, D:H.143, D:H.212
- 4 x 2HA: Dihydroxyacetone(Non-covalent)
2HA.4: 13 residues within 4Å:- Chain A: N.29, G.30, G.31, N.32, E.117, H.141, H.143, W.209, H.212
- Ligands: ZN.1, PO4.2, PO4.3, GOL.6
8 PLIP interactions:2 interactions with chain C, 6 interactions with chain A- Water bridges: C:E.171, C:E.171, A:R.28, A:N.29, A:N.29
- Hydrogen bonds: A:G.31, A:N.32, A:E.117
2HA.13: 13 residues within 4Å:- Chain B: N.29, G.30, G.31, N.32, E.117, H.141, H.143, W.209, H.212
- Ligands: ZN.10, PO4.11, PO4.12, GOL.15
8 PLIP interactions:6 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:G.31, B:N.32, B:E.117
- Water bridges: B:R.28, B:N.29, B:N.29, A:E.171, A:E.171
2HA.22: 13 residues within 4Å:- Chain C: N.29, G.30, G.31, N.32, E.117, H.141, H.143, W.209, H.212
- Ligands: ZN.19, PO4.20, PO4.21, GOL.24
8 PLIP interactions:2 interactions with chain D, 6 interactions with chain C- Water bridges: D:E.171, D:E.171, C:R.28, C:N.29, C:N.29
- Hydrogen bonds: C:G.31, C:N.32, C:E.117
2HA.31: 13 residues within 4Å:- Chain D: N.29, G.30, G.31, N.32, E.117, H.141, H.143, W.209, H.212
- Ligands: ZN.28, PO4.29, PO4.30, GOL.33
8 PLIP interactions:2 interactions with chain B, 6 interactions with chain D- Water bridges: B:E.171, B:E.171, D:R.28, D:N.29, D:N.29
- Hydrogen bonds: D:G.31, D:N.32, D:E.117
- 4 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)
DIO.5: 4 residues within 4Å:- Chain A: H.46, D.47, F.49, Q.51
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.51
DIO.14: 4 residues within 4Å:- Chain B: H.46, D.47, F.49, Q.51
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.51
DIO.23: 4 residues within 4Å:- Chain C: H.46, D.47, F.49, Q.51
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:Q.51
DIO.32: 4 residues within 4Å:- Chain D: H.46, D.47, F.49, Q.51
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:Q.51
- 16 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 7 residues within 4Å:- Chain A: R.28, N.29, P.188
- Chain C: E.171, F.263
- Ligands: PO4.3, 2HA.4
Ligand excluded by PLIPGOL.7: 6 residues within 4Å:- Chain A: G.76, K.77, F.78, N.81
- Chain C: D.222, E.223
Ligand excluded by PLIPGOL.8: 4 residues within 4Å:- Chain A: R.80, Q.83, L.84
- Chain C: L.22
Ligand excluded by PLIPGOL.9: 5 residues within 4Å:- Chain A: V.153, L.154, Y.242
- Chain C: M.244, K.248
Ligand excluded by PLIPGOL.15: 7 residues within 4Å:- Chain A: E.171, F.263
- Chain B: R.28, N.29, P.188
- Ligands: PO4.12, 2HA.13
Ligand excluded by PLIPGOL.16: 6 residues within 4Å:- Chain A: D.222, E.223
- Chain B: G.76, K.77, F.78, N.81
Ligand excluded by PLIPGOL.17: 4 residues within 4Å:- Chain A: L.22
- Chain B: R.80, Q.83, L.84
Ligand excluded by PLIPGOL.18: 5 residues within 4Å:- Chain A: M.244, K.248
- Chain B: V.153, L.154, Y.242
Ligand excluded by PLIPGOL.24: 7 residues within 4Å:- Chain C: R.28, N.29, P.188
- Chain D: E.171, F.263
- Ligands: PO4.21, 2HA.22
Ligand excluded by PLIPGOL.25: 6 residues within 4Å:- Chain C: G.76, K.77, F.78, N.81
- Chain D: D.222, E.223
Ligand excluded by PLIPGOL.26: 4 residues within 4Å:- Chain C: R.80, Q.83, L.84
- Chain D: L.22
Ligand excluded by PLIPGOL.27: 5 residues within 4Å:- Chain C: V.153, L.154, Y.242
- Chain D: M.244, K.248
Ligand excluded by PLIPGOL.33: 7 residues within 4Å:- Chain B: E.171, F.263
- Chain D: R.28, N.29, P.188
- Ligands: PO4.30, 2HA.31
Ligand excluded by PLIPGOL.34: 6 residues within 4Å:- Chain B: D.222, E.223
- Chain D: G.76, K.77, F.78, N.81
Ligand excluded by PLIPGOL.35: 4 residues within 4Å:- Chain B: L.22
- Chain D: R.80, Q.83, L.84
Ligand excluded by PLIPGOL.36: 5 residues within 4Å:- Chain B: M.244, K.248
- Chain D: V.153, L.154, Y.242
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kroemer, M. et al., Structure and Catalytic Mechanism of L-Rhamnulose-1-Phosphate Aldolase. Biochemistry (2003)
- Release Date
- 2003-09-11
- Peptides
- RHAMNULOSE-1-PHOSPHATE ALDOLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 8 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x 2HA: Dihydroxyacetone(Non-covalent)
- 4 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)
- 16 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kroemer, M. et al., Structure and Catalytic Mechanism of L-Rhamnulose-1-Phosphate Aldolase. Biochemistry (2003)
- Release Date
- 2003-09-11
- Peptides
- RHAMNULOSE-1-PHOSPHATE ALDOLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A