SMTL ID : 1ojt.1

STRUCTURE OF DIHYDROLIPOAMIDE DEHYDROGENASE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 40 residues within 4Å: Chain A: L.12, G.13, G.14, G.15, P.16, G.17, V.35, E.36, R.37, Y.38, G.43, V.44, C.45, V.48, G.49, C.50, S.53, K.54, G.115, D.116, G.117, Y.135, A.155, A.156, G.157, S.175, L.179, I.196, R.284, I.291, G.323, D.324, M.330, L.331, A.332, H.333, A.335, Y.363 Chain B: H.456, P.457 34 PLIP interactions: 31 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:V.44, A:L.179, A:I.196, A:I.196 Hydrogen bonds: A:G.14, A:G.15, A:G.17, A:R.37, A:V.44, A:C.45, A:K.54, A:G.117, A:G.117, A:Y.135, A:S.158, A:D.324, A:D.324, A:M.330, A:A.332, A:H.333, A:H.333, B:H.456 Water bridges: A:G.18, A:E.36, A:Y.135, A:Y.135, A:Y.135, A:G.157, A:G.157, A:Y.363, A:Y.363, B:H.456, B:H.456 pi-Cation interactions: A:R.37 FAD.2: 40 residues within 4Å: Chain A: H.456, P.457 Chain B: L.12, G.13, G.14, G.15, P.16, G.17, V.35, E.36, R.37, Y.38, G.43, V.44, C.45, V.48, G.49, C.50, S.53, K.54, G.115, D.116, G.117, Y.135, A.155, A.156, G.157, S.175, L.179, I.196, R.284, I.291, G.323, D.324, M.330, L.331, A.332, H.333, A.335, Y.363 31 PLIP interactions: 28 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:V.44, B:L.179, B:I.196, B:I.196 Hydrogen bonds: B:G.14, B:G.15, B:G.17, B:R.37, B:V.44, B:C.45, B:K.54, B:G.117, B:G.117, B:Y.135, B:Y.135, B:S.158, B:D.324, B:M.330, B:A.332, B:H.333, A:H.456 Water bridges: B:G.18, B:R.37, B:G.43, B:Y.135, B:G.157, B:G.157, B:S.158, A:H.456, A:H.456 pi-Cation interactions: B:R.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li de la Sierra, I. et al., Molecular structure of the lipoamide dehydrogenase domain of a surface antigen from Neisseria meningitidis. J.Mol.Biol. (1997)

Release Date

1997-10-15

Peptides

SURFACE PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

SURFACE PROTEIN