SMTL ID : 1okc.1

structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x CXT: CARBOXYATRACTYLOSIDE(Non-covalent)

CXT.1: 16 residues within 4Å: Chain A: K.22, R.79, N.87, K.91, G.123, L.127, V.130, G.182, I.183, Y.186, R.187, S.227, F.230, D.231, R.234, R.235 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:L.127, A:V.130, A:I.183, A:Y.186, A:Y.186, A:F.230, A:D.231 Hydrogen bonds: A:Q.84, A:N.87, A:N.87, A:R.187, A:D.231, A:R.234, A:R.234 Water bridges: A:K.91, A:K.91, A:K.91, A:G.123, A:R.279, A:R.279 Salt bridges: A:K.22, A:R.79, A:K.91, A:K.91, A:R.187, A:R.279

3 x CDL: CARDIOLIPIN(Non-covalent)

CDL.2: 13 residues within 4Å: Chain A: T.23, W.70, R.71, G.72, N.73, L.74, V.77, L.140, T.154, G.155, L.156 Ligands: PC1.7, PC1.9 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.70, A:L.74 Hydrogen bonds: A:G.72, A:N.73, A:L.74, A:L.156 Water bridges: A:G.72, A:A.75, A:R.151 CDL.3: 14 residues within 4Å: Chain A: L.35, G.52, I.53, I.54, L.225, F.270, K.271, G.272, A.273, W.274, S.275, L.278 Ligands: LDM.6, PC1.10 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.270, A:F.270 Hydrogen bonds: A:I.53, A:I.54, A:G.272, A:W.274, A:S.275 CDL.4: 7 residues within 4Å: Chain A: A.124, C.128, Y.173, F.176, N.177, V.180, Q.181 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.124, A:V.180, A:Q.181

2 x LDM: 3-LAURYLAMIDO-N,N'-DIMETHYLPROPYLAMINOXYDE(Non-covalent)

LDM.5: 6 residues within 4Å: Chain A: R.258, A.261, P.266, F.269, F.270 Ligands: LDM.6 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.261, A:F.269, A:F.270 LDM.6: 8 residues within 4Å: Chain A: V.193, V.226, P.229, F.230, W.257, F.270 Ligands: CDL.3, LDM.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.193, A:V.226, A:P.229, A:F.270 pi-Cation interactions: A:W.257

4 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PC1.7: 8 residues within 4Å: Chain A: L.74, I.78, T.154, G.155, L.156, G.157, N.158 Ligands: CDL.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.78 Hydrogen bonds: A:G.155, A:G.157, A:N.158 PC1.8: 6 residues within 4Å: Chain A: K.106, Q.107, F.108, W.109, R.110, A.113 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.109, A:A.113 Hydrogen bonds: A:W.109, A:R.110 PC1.9: 3 residues within 4Å: Chain A: F.66, L.67 Ligands: CDL.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.66, A:L.67 Hydrogen bonds: A:L.67 Water bridges: A:F.66, A:F.66, A:S.68 PC1.10: 2 residues within 4Å: Chain A: W.274 Ligands: CDL.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.274

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pebay-Peyroula, E. et al., Structure of Mitochondrial Adp/ATP Carrier in Complex with Carboxyatractyloside. Nature (2003)

Release Date

2003-11-07

Peptides

ADP, ATP CARRIER PROTEIN HEART ISOFORM T1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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ADP, ATP CARRIER PROTEIN HEART ISOFORM T1

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