SMTL ID : 1oky.1

Structure of human PDK1 kinase domain in complex with staurosporine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: R.56, E.57, Y.58, Y.96, S.110, Y.111 Ligands: SO4.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.56, A:Y.111 GOL.2: 2 residues within 4Å: Chain A: H.301, Q.302 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.302 GOL.3: 8 residues within 4Å: Chain A: H.89, S.141, W.297, E.298, N.299, L.300, H.301, Q.302 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.89, A:S.141, A:E.298, A:L.300, A:H.301, A:Q.302

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: K.26, R.81, T.98, F.99, Q.100 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.98, A:Q.100 Water bridges: A:Q.100 Salt bridges: A:K.26, A:R.81 SO4.5: 3 residues within 4Å: Chain A: Q.23, P.24, R.25 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.25 SO4.6: 2 residues within 4Å: Chain A: R.56 Ligands: GOL.1 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.56 SO4.7: 3 residues within 4Å: Chain A: F.32, K.33, F.34 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.34, A:F.34 SO4.8: 2 residues within 4Å: Chain A: K.33, R.50 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.33, A:R.50

1 x STU: STAUROSPORINE(Non-covalent)

STU.9: 16 residues within 4Å: Chain A: L.38, G.39, V.46, A.59, K.61, L.109, S.110, Y.111, A.112, G.115, E.116, E.159, N.160, L.162, T.172, D.173 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.38, A:L.38, A:V.46, A:V.46, A:K.61, A:L.109, A:L.162, A:T.172, A:D.173 Hydrogen bonds: A:A.112, A:E.116, A:E.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Komander, D. et al., Structural Basis for Ucn-01 (7-Hydroxystaurosporine) Specificity and Pdk1 (3-Phosphoinositide-Dependent Protein Kinase-1) Inhibition. Biochem.J. (2003)

Release Date

2004-07-29

Peptides

3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE 1

Related Entries With Identical Sequence