SMTL ID : 1omo.1

alanine dehydrogenase dimer w/bound NAD (archaeal)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: A.215, I.216, G.217, A.218, E.225, E.249 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.193, A:A.218, A:E.249, A:E.249 Water bridges: A:E.249 NA.3: 6 residues within 4Å: Chain B: A.215, I.216, G.217, A.218, E.225, E.249 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.193, B:T.193, B:A.218, B:E.225, B:E.249 Water bridges: B:E.249

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.2: 22 residues within 4Å: Chain A: R.108, T.109, G.132, C.133, G.134, T.135, Q.136, Y.156, D.157, V.158, R.159, T.194, T.195, P.196, V.201, I.216, G.217, D.219, K.223, S.290, T.291, G.292 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:T.109 Hydrogen bonds: A:R.108, A:T.135, A:Q.136, A:V.158, A:R.159, A:T.195, A:I.216, A:K.223 Water bridges: A:T.135, A:T.135, A:A.137, A:A.137, A:Y.156, A:K.223, A:G.292 NAD.4: 22 residues within 4Å: Chain B: R.108, T.109, G.132, G.134, T.135, Q.136, Y.156, D.157, V.158, R.159, T.194, T.195, P.196, S.197, V.201, I.216, G.217, D.219, K.223, S.290, T.291, G.292 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:T.109 Hydrogen bonds: B:R.108, B:T.135, B:T.135, B:Q.136, B:V.158, B:R.159, B:T.195, B:T.195, B:K.223, B:K.223, B:S.290 Water bridges: B:S.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gallagher, D.T. et al., Structure of alanine dehydrogenase from Archaeoglobus: active site analysis and relation to bacterial cyclodeaminases and mammalian mu crystallin. J.Mol.Biol. (2004)

Release Date

2004-07-06

Peptides

alanine dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

alanine dehydrogenase